Variant report

Variant	rs1946735
Chromosome Location	chr4:96549484-96549485
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13103169	0.94[ASN][1000 genomes]
rs2043657	0.82[ASN][1000 genomes]
rs35403357	0.82[ASN][1000 genomes]
rs987382	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96548600-96550400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:96548800-96550600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:96549000-96550000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:96549400-96549800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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