Variant report

Variant	rs1947923
Chromosome Location	chr11:55904751-55904752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:55904745-55904803	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
OR5BN1P	TF binding region

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10160392	0.80[AMR][1000 genomes]
rs11227517	1.00[YRI][hapmap]
rs11227518	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11227519	1.00[YRI][hapmap]
rs12099295	1.00[CEU][hapmap]
rs12270268	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279899	0.90[YRI][hapmap]
rs12289610	1.00[YRI][hapmap]
rs12292831	0.81[AFR][1000 genomes]
rs17527401	1.00[CEU][hapmap]
rs17527788	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17528782	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17528803	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17530318	0.94[EUR][1000 genomes]
rs17530360	0.94[EUR][1000 genomes]
rs17530416	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17530423	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17531417	1.00[CEU][hapmap]
rs17541821	1.00[CEU][hapmap]
rs17541876	1.00[CEU][hapmap]
rs17598017	1.00[CEU][hapmap]
rs17598045	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap]
rs17598094	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap]
rs17599457	1.00[CEU][hapmap]
rs17599471	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap]
rs17599899	1.00[CEU][hapmap];0.83[GIH][hapmap];0.93[TSI][hapmap]
rs17600692	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17600784	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17600820	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17600939	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17601361	1.00[CEU][hapmap]
rs17601459	1.00[CEU][hapmap]
rs17603011	0.94[EUR][1000 genomes]
rs17603260	1.00[CEU][hapmap]
rs17610726	1.00[CEU][hapmap]
rs17613345	1.00[CEU][hapmap]
rs2170446	1.00[CEU][hapmap]
rs2449138	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2449139	1.00[YRI][hapmap]
rs2512932	0.87[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2512961	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs28421520	0.94[EUR][1000 genomes]
rs28537497	0.94[EUR][1000 genomes]
rs28688517	0.94[EUR][1000 genomes]
rs2870138	1.00[CEU][hapmap]
rs4338547	1.00[CEU][hapmap]
rs55696205	0.94[EUR][1000 genomes]
rs56208265	0.94[EUR][1000 genomes]
rs56393785	0.94[EUR][1000 genomes]
rs61746167	0.94[EUR][1000 genomes]
rs61887074	0.94[EUR][1000 genomes]
rs61887088	0.94[EUR][1000 genomes]
rs61887089	0.94[EUR][1000 genomes]
rs61887090	0.94[EUR][1000 genomes]
rs61887091	0.94[EUR][1000 genomes]
rs61887092	0.94[EUR][1000 genomes]
rs61887137	0.92[EUR][1000 genomes]
rs61887142	0.94[EUR][1000 genomes]
rs61887143	0.92[EUR][1000 genomes]
rs61888467	0.81[EUR][1000 genomes]
rs61888468	0.87[EUR][1000 genomes]
rs61888469	0.87[EUR][1000 genomes]
rs61888470	0.87[EUR][1000 genomes]
rs61888471	0.87[EUR][1000 genomes]
rs61888472	0.87[EUR][1000 genomes]
rs61888473	0.87[EUR][1000 genomes]
rs61888545	0.87[EUR][1000 genomes]
rs61888546	0.87[EUR][1000 genomes]
rs61889973	0.87[EUR][1000 genomes]
rs61889974	0.87[EUR][1000 genomes]
rs61889975	0.87[EUR][1000 genomes]
rs61891189	0.94[EUR][1000 genomes]
rs61891190	0.94[EUR][1000 genomes]
rs61891191	0.94[EUR][1000 genomes]
rs61891194	0.94[EUR][1000 genomes]
rs61891195	0.94[EUR][1000 genomes]
rs61891196	0.87[EUR][1000 genomes]
rs61891197	0.94[EUR][1000 genomes]
rs61891198	0.94[EUR][1000 genomes]
rs61891199	0.94[EUR][1000 genomes]
rs61891201	0.94[EUR][1000 genomes]
rs61891202	0.94[EUR][1000 genomes]
rs61891203	0.94[EUR][1000 genomes]
rs61891205	0.94[EUR][1000 genomes]
rs61891206	0.94[EUR][1000 genomes]
rs61891209	0.91[EUR][1000 genomes]
rs61891210	0.94[EUR][1000 genomes]
rs61891211	0.94[EUR][1000 genomes]
rs7102893	0.94[EUR][1000 genomes]
rs7104912	0.86[EUR][1000 genomes]
rs7106248	1.00[CEU][hapmap]
rs7109136	0.94[EUR][1000 genomes]
rs7109807	0.90[CEU][hapmap];0.94[EUR][1000 genomes]
rs7110317	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7110689	0.94[EUR][1000 genomes]
rs7113176	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7113418	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7113601	0.86[EUR][1000 genomes]
rs7114865	0.94[EUR][1000 genomes]
rs7119253	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs7125690	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7128453	0.87[EUR][1000 genomes]
rs7131505	0.86[EUR][1000 genomes]
rs7131616	0.86[EUR][1000 genomes]
rs7936720	1.00[CEU][hapmap]
rs7943492	0.94[EUR][1000 genomes]
rs7948567	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
2	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	esv2752628	chr11:55682604-55948184	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
9	nsv521440	chr11:55763943-56052521	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv832160	chr11:55780185-55916798	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
11	nsv949437	chr11:55780469-56042980	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1036290	chr11:55807948-55934985	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
13	esv2754280	chr11:55823576-55927591	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
14	nsv468575	chr11:55847945-55937954	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
15	nsv555095	chr11:55847945-55937954	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
16	nsv1039279	chr11:55900482-56008437	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	nsv541045	chr11:55900482-56008437	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
19	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
20	nsv972029	chr11:55904655-55905468	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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