Variant report

Variant	rs1949453
Chromosome Location	chr2:181910774-181910775
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181906607..181910803-chr2:181912634..181916168,4	K562	blood:
2	chr2:181904529..181906605-chr2:181909242..181911022,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10803945	0.80[EUR][1000 genomes]
rs10930949	0.80[EUR][1000 genomes]
rs10930951	0.81[CEU][hapmap]
rs12475075	0.80[EUR][1000 genomes]
rs12477135	0.80[EUR][1000 genomes]
rs12614444	0.80[EUR][1000 genomes]
rs4299301	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs4508560	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4638755	0.82[CEU][hapmap]
rs4667036	0.80[EUR][1000 genomes]
rs6729509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181901200-181912200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:181901600-181911200	Weak transcription	GM12878-XiMat	blood
3	chr2:181902200-181926400	Weak transcription	HSMM	muscle
4	chr2:181902800-181934200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:181903600-181918800	Weak transcription	NHEK	skin
6	chr2:181903800-181917000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:181903800-181934600	Weak transcription	NH-A	brain
8	chr2:181904200-181919200	Weak transcription	Osteobl	bone
9	chr2:181904400-181915600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:181904400-181934000	Weak transcription	NHDF-Ad	bronchial
11	chr2:181904400-181945400	Weak transcription	Left Ventricle	heart
12	chr2:181906400-181919400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:181907600-181917000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr2:181907800-181910800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:181907800-181911000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr2:181907800-181911000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:181908000-181911000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr2:181908800-181910800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr2:181909400-181911400	Enhancers	Brain Cingulate Gyrus	brain
20	chr2:181909400-181911800	Enhancers	Primary T cells from cord blood	blood
21	chr2:181909800-181911200	Enhancers	Brain Angular Gyrus	brain
22	chr2:181909800-181911400	Enhancers	Brain Substantia Nigra	brain
23	chr2:181909800-181911800	Enhancers	Brain Hippocampus Middle	brain
24	chr2:181910000-181911400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr2:181910000-181912600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr2:181910200-181910800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr2:181910200-181911000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr2:181910200-181911000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr2:181910200-181911000	Weak transcription	Stomach Mucosa	stomach
30	chr2:181910200-181911200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr2:181910200-181911400	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr2:181910200-181911800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr2:181910400-181910800	Weak transcription	Fetal Lung	lung
34	chr2:181910400-181916800	Weak transcription	Colon Smooth Muscle	Colon
35	chr2:181910600-181912400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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