Variant report

Variant	rs1950353
Chromosome Location	chr14:37193342-37193343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1429846	1.00[EUR][1000 genomes]
rs17105258	1.00[EUR][1000 genomes]
rs17105317	1.00[EUR][1000 genomes]
rs17105389	1.00[EUR][1000 genomes]
rs17105392	1.00[EUR][1000 genomes]
rs17105396	1.00[EUR][1000 genomes]
rs17105423	1.00[EUR][1000 genomes]
rs17105467	1.00[EUR][1000 genomes]
rs2415362	1.00[EUR][1000 genomes]
rs55733140	1.00[EUR][1000 genomes]
rs6571763	1.00[EUR][1000 genomes]
rs74044987	1.00[EUR][1000 genomes]
rs74045000	1.00[EUR][1000 genomes]
rs8007647	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1053685	chr14:36915643-37245920	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37190400-37197000	Weak transcription	K562	blood
2	chr14:37192200-37193600	Enhancers	Dnd41	blood
3	chr14:37192800-37193800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr14:37192800-37194000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr14:37192800-37194000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:37192800-37194000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr14:37192800-37194000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:37192800-37194000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr14:37193000-37194000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr14:37193000-37194000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr14:37193000-37194000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr14:37193200-37193800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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