Variant report

Variant	rs1951180
Chromosome Location	chr14:32872752-32872753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1956999	1.00[EUR][1000 genomes]
rs1957003	1.00[EUR][1000 genomes]
rs2025262	1.00[EUR][1000 genomes]
rs2145589	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2145590	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2145592	1.00[EUR][1000 genomes]
rs7140664	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7157707	1.00[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7158034	1.00[EUR][1000 genomes]
rs8010314	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs8011313	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs941741	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv976820	chr14:32860301-32873799	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1951180	FAM118A	trans	lymphoblastoid	seeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32865600-32876400	Weak transcription	Fetal Brain Male	brain
2	chr14:32866400-32876200	Weak transcription	Left Ventricle	heart
3	chr14:32867600-32873000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:32867600-32876600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:32867600-32882800	Weak transcription	Fetal Brain Female	brain
6	chr14:32867800-32875800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:32868000-32872800	Weak transcription	NH-A	brain
8	chr14:32868000-32872800	Weak transcription	NHEK	skin
9	chr14:32868000-32873400	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:32868000-32874400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:32868000-32876000	Weak transcription	Brain Angular Gyrus	brain
12	chr14:32868400-32872800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:32868800-32873600	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:32868800-32874000	Weak transcription	Brain Germinal Matrix	brain
15	chr14:32869400-32874200	Weak transcription	Brain Substantia Nigra	brain
16	chr14:32870000-32876200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:32870200-32883000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:32870400-32872800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr14:32870400-32872800	Weak transcription	HMEC	breast
20	chr14:32870400-32873000	Weak transcription	NHDF-Ad	bronchial
21	chr14:32870800-32873000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:32870800-32873600	Weak transcription	HSMM	muscle
23	chr14:32871200-32873000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:32871200-32873000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:32871200-32874800	Enhancers	Fetal Heart	heart
26	chr14:32871400-32876200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr14:32872400-32873200	Enhancers	Brain Cingulate Gyrus	brain
28	chr14:32872400-32873800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr14:32872600-32878000	Enhancers	Brain Anterior Caudate	brain
30	chr14:32872600-32878000	Enhancers	Brain Inferior Temporal Lobe	brain

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