Variant report

Variant	rs1951681
Chromosome Location	chr14:32851025-32851026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1951183	1.00[JPT][hapmap]
rs1951185	0.90[JPT][hapmap]
rs1951682	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3784178	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3784187	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs6571514	1.00[JPT][hapmap]
rs8005778	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Economic and political preferences (environmentalism)	22566634	GWAS catalog

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32846800-32851800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:32847000-32854000	Weak transcription	Fetal Brain Female	brain
3	chr14:32847600-32852800	Weak transcription	Brain Anterior Caudate	brain
4	chr14:32849000-32851200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:32849000-32867400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:32849200-32851200	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:32849200-32853000	Weak transcription	Psoas Muscle	Psoas
8	chr14:32849600-32851800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:32849800-32851200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:32850200-32851200	Weak transcription	Brain Substantia Nigra	brain
11	chr14:32850800-32854200	Enhancers	NHEK	skin
12	chr14:32850800-32854400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:32851000-32851600	Enhancers	Gastric	stomach
14	chr14:32851000-32851600	Enhancers	Hela-S3	cervix
15	chr14:32851000-32851800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:32851000-32851800	Enhancers	HMEC	breast
17	chr14:32851000-32852000	Enhancers	Brain Angular Gyrus	brain
18	chr14:32851000-32852000	Enhancers	Stomach Mucosa	stomach
19	chr14:32851000-32854200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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