Variant report

Variant	rs1952569
Chromosome Location	chr14:38790057-38790058
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11851242	0.84[ASN][1000 genomes]
rs12587095	0.81[ASN][1000 genomes]
rs12588255	0.84[ASN][1000 genomes]
rs12588696	0.84[ASN][1000 genomes]
rs1475516	0.84[ASN][1000 genomes]
rs17107853	0.84[ASN][1000 genomes]
rs17107886	0.82[ASN][1000 genomes]
rs17107889	0.82[ASN][1000 genomes]
rs17107913	0.80[ASN][1000 genomes]
rs1952555	0.84[ASN][1000 genomes]
rs1952558	0.82[ASN][1000 genomes]
rs1952559	0.82[ASN][1000 genomes]
rs1952571	0.84[ASN][1000 genomes]
rs1952572	0.84[ASN][1000 genomes]
rs1958459	0.84[ASN][1000 genomes]
rs1958460	0.84[ASN][1000 genomes]
rs1958466	0.82[ASN][1000 genomes]
rs1958498	0.84[ASN][1000 genomes]
rs2183235	0.82[ASN][1000 genomes]
rs2183237	0.84[ASN][1000 genomes]
rs4898944	0.85[ASN][1000 genomes]
rs57009101	0.82[ASN][1000 genomes]
rs59648655	0.82[ASN][1000 genomes]
rs61975987	0.84[ASN][1000 genomes]
rs61975988	0.84[ASN][1000 genomes]
rs61975999	0.84[ASN][1000 genomes]
rs7145965	0.84[ASN][1000 genomes]
rs7147483	0.84[ASN][1000 genomes]
rs7151822	0.84[ASN][1000 genomes]
rs8003776	0.83[ASN][1000 genomes]
rs8012584	0.82[ASN][1000 genomes]
rs928103	0.84[ASN][1000 genomes]
rs928104	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv533235	chr14:38558180-39117391	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv530640	chr14:38702117-38927901	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2757560	chr14:38788605-38804433	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2759979	chr14:38788605-38804433	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38788400-38791000	Weak transcription	Ovary	ovary
2	chr14:38789800-38790200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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