Variant report

Variant	rs1953642
Chromosome Location	chr13:65123634-65123635
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11148647	0.81[EUR][1000 genomes]
rs11148648	0.83[EUR][1000 genomes]
rs12857606	0.98[ASN][1000 genomes]
rs12874888	0.99[ASN][1000 genomes]
rs1336591	0.95[EUR][1000 genomes]
rs1537913	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1537914	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1544135	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1572452	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17088301	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2027211	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152671	0.92[ASN][1000 genomes]
rs2152672	0.97[ASN][1000 genomes]
rs34692903	0.99[ASN][1000 genomes]
rs34947748	0.99[ASN][1000 genomes]
rs35734409	0.93[ASN][1000 genomes]
rs4144235	0.87[EUR][1000 genomes]
rs4264269	0.95[EUR][1000 genomes]
rs4643182	0.99[ASN][1000 genomes]
rs4884581	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4884582	0.95[EUR][1000 genomes]
rs61949995	0.95[EUR][1000 genomes]
rs7332525	0.82[EUR][1000 genomes]
rs7338871	0.82[EUR][1000 genomes]
rs7990152	0.87[EUR][1000 genomes]
rs7991350	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7992528	0.95[EUR][1000 genomes]
rs7996338	0.98[ASN][1000 genomes]
rs7996502	0.87[EUR][1000 genomes]
rs7997635	0.98[ASN][1000 genomes]
rs7998011	0.99[ASN][1000 genomes]
rs7999207	0.99[ASN][1000 genomes]
rs9317432	0.99[ASN][1000 genomes]
rs9528783	0.98[ASN][1000 genomes]
rs9540134	0.81[EUR][1000 genomes]
rs9540135	0.81[EUR][1000 genomes]
rs9540139	0.86[EUR][1000 genomes]
rs9540144	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9540145	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9540146	0.95[EUR][1000 genomes]
rs9540147	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900344	chr13:64868768-65193124	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900346	chr13:64999866-65198145	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv428606	chr13:65008453-65158452	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv900348	chr13:65074137-65193124	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900349	chr13:65117966-65193124	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv900350	chr13:65117966-65222862	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv900351	chr13:65117966-65229479	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65115400-65124400	Weak transcription	HUVEC	blood vessel
2	chr13:65118400-65124400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:65120400-65124000	Weak transcription	HMEC	breast
4	chr13:65120400-65125600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:65121200-65124000	Weak transcription	NHDF-Ad	bronchial
6	chr13:65121400-65125600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:65123200-65123800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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