Variant report

Variant	rs1955399
Chromosome Location	chr12:86881383-86881384
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:86873477..86875774-chr12:86880255..86882982,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10431399	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap]
rs10735250	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10745416	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10745419	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10776961	0.89[JPT][hapmap]
rs10776968	0.87[AMR][1000 genomes]
rs10776969	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs10776971	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10776976	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10776977	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10858412	0.89[JPT][hapmap]
rs10858419	0.90[AMR][1000 genomes]
rs10858425	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs10858427	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs10858428	0.82[CHB][hapmap];0.90[YRI][hapmap]
rs10858436	0.87[YRI][hapmap]
rs10858444	0.90[YRI][hapmap]
rs11103983	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12317113	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap]
rs12578669	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap]
rs12582690	0.89[JPT][hapmap]
rs1922742	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1922749	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs2091818	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2405923	0.81[CEU][hapmap];0.93[YRI][hapmap]
rs2405925	0.89[JPT][hapmap]
rs2405928	0.89[JPT][hapmap]
rs2405930	0.89[JPT][hapmap]
rs2406115	0.89[JPT][hapmap]
rs2406160	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[YRI][hapmap]
rs2897280	0.89[JPT][hapmap]
rs4265650	0.83[JPT][hapmap]
rs4370997	0.84[CHB][hapmap];0.90[YRI][hapmap]
rs4399378	0.87[YRI][hapmap]
rs4628748	0.89[JPT][hapmap]
rs6538033	0.89[JPT][hapmap]
rs6538042	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs6538046	0.89[YRI][hapmap]
rs7139324	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7297574	0.93[YRI][hapmap]
rs7299319	0.89[JPT][hapmap];0.80[YRI][hapmap]
rs7303796	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7957560	0.84[JPT][hapmap]
rs7963659	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs7972484	0.84[JPT][hapmap]
rs7973543	0.97[YRI][hapmap]
rs7977689	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899396	chr12:86863041-87276957	ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv899398	chr12:86880442-87051310	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv899399	chr12:86880442-87177972	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv275003	chr12:86880778-86890003	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86878600-86882800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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