Variant report

Variant	rs1955756
Chromosome Location	chr14:37586381-37586382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37578874..37583867-chr14:37583944..37587801,9	MCF-7	breast:
2	chr14:37443180..37446784-chr14:37583565..37587987,4	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10047908	0.87[YRI][hapmap]
rs10134502	0.80[CEU][hapmap]
rs10135285	0.86[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap]
rs10137595	0.88[YRI][hapmap]
rs10149217	0.80[CEU][hapmap]
rs10150704	0.86[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap]
rs10483489	0.86[YRI][hapmap]
rs1080374	0.81[EUR][1000 genomes]
rs11156934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11156935	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11620965	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11622236	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12879089	0.88[CEU][hapmap]
rs12883655	0.81[EUR][1000 genomes]
rs12883794	0.81[EUR][1000 genomes]
rs12893236	0.83[CEU][hapmap]
rs1467486	0.88[YRI][hapmap]
rs1467489	0.88[YRI][hapmap]
rs1467490	0.88[YRI][hapmap]
rs17106359	0.86[YRI][hapmap]
rs1950884	0.87[CEU][hapmap]
rs1950886	0.80[CEU][hapmap]
rs2093119	0.86[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap]
rs2180632	0.80[CEU][hapmap]
rs34301509	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61988264	0.81[EUR][1000 genomes]
rs6571791	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs6571792	0.81[EUR][1000 genomes]
rs6571793	0.80[EUR][1000 genomes]
rs6571794	0.81[EUR][1000 genomes]
rs714229	0.86[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap]
rs714230	0.86[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap]
rs7142673	0.86[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap]
rs7143494	0.91[CEU][hapmap];0.95[CHB][hapmap]
rs7143703	0.81[EUR][1000 genomes]
rs7143938	0.82[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap]
rs7149939	0.86[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap]
rs7151497	0.86[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap]
rs7153180	0.95[CEU][hapmap]
rs7157361	0.81[EUR][1000 genomes]
rs7161425	0.88[CEU][hapmap]
rs761678	0.86[YRI][hapmap]
rs8005022	0.87[YRI][hapmap]
rs8012018	0.86[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap]
rs8014303	0.81[EUR][1000 genomes]
rs8015843	0.81[EUR][1000 genomes]
rs8016262	0.81[EUR][1000 genomes]
rs8019549	0.86[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap]
rs910509	0.86[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap]
rs987826	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv564347	chr14:37558794-37590164	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv564348	chr14:37584981-37608459	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37582400-37587600	Enhancers	Hela-S3	cervix
2	chr14:37582400-37602800	Weak transcription	K562	blood
3	chr14:37583800-37586400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:37585000-37586400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:37585000-37586400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:37585400-37586400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:37585400-37587000	Enhancers	HUVEC	blood vessel
8	chr14:37585600-37587000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:37585800-37586800	Flanking Active TSS	A549	lung
10	chr14:37585800-37587000	Enhancers	HMEC	breast
11	chr14:37585800-37587000	Enhancers	NH-A	brain
12	chr14:37586000-37586800	Enhancers	Osteobl	bone
13	chr14:37586000-37587000	Enhancers	NHEK	skin
14	chr14:37586200-37586400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr14:37586200-37586400	Enhancers	Aorta	Aorta
16	chr14:37586200-37586800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr14:37586200-37587000	Enhancers	HSMMtube	muscle
18	chr14:37586200-37591000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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