Variant report

Variant	rs1956216
Chromosome Location	chr14:33069463-33069464
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1956201	0.82[ASN][1000 genomes]
rs66513748	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7141387	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7152377	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs7154943	0.92[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs8016257	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs8021432	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33057800-33078200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:33059400-33072000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:33064000-33071200	Weak transcription	Aorta	Aorta
4	chr14:33064200-33070200	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:33064600-33070200	Weak transcription	Brain Anterior Caudate	brain
6	chr14:33064600-33071400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:33064600-33071400	Weak transcription	Brain Substantia Nigra	brain
8	chr14:33064600-33071400	Weak transcription	Left Ventricle	heart
9	chr14:33064600-33071400	Weak transcription	Right Ventricle	heart
10	chr14:33064600-33074600	Weak transcription	Psoas Muscle	Psoas
11	chr14:33064600-33075600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:33064800-33069800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:33064800-33069800	Weak transcription	HSMMtube	muscle
14	chr14:33064800-33070800	Weak transcription	Fetal Stomach	stomach
15	chr14:33064800-33071000	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:33064800-33071600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr14:33064800-33079600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr14:33065000-33070400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr14:33066000-33071200	Weak transcription	NHLF	lung
20	chr14:33066200-33069800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr14:33066400-33069800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr14:33067200-33069800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr14:33067400-33070200	Weak transcription	NHDF-Ad	bronchial
24	chr14:33067400-33077800	Weak transcription	HSMM	muscle
25	chr14:33067600-33069800	Weak transcription	Brain Germinal Matrix	brain
26	chr14:33067600-33069800	Enhancers	Fetal Heart	heart
27	chr14:33067600-33070400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr14:33067800-33070200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:33067800-33071200	Weak transcription	Brain Hippocampus Middle	brain
30	chr14:33067800-33071400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:33068200-33071600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr14:33068600-33072000	Weak transcription	Brain Angular Gyrus	brain

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