Variant report

Variant	rs1958383
Chromosome Location	chr14:25526867-25526868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10133686	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10138503	0.82[EUR][1000 genomes]
rs10143439	0.82[EUR][1000 genomes]
rs11847778	0.81[EUR][1000 genomes]
rs11850786	0.81[CEU][hapmap]
rs17109382	0.81[CEU][hapmap]
rs17109406	0.81[CEU][hapmap];0.86[TSI][hapmap]
rs17109462	0.81[CEU][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap]
rs17109515	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17109537	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17109547	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952491	0.85[EUR][1000 genomes]
rs1952499	0.84[EUR][1000 genomes]
rs1952500	0.81[EUR][1000 genomes]
rs1952507	0.81[EUR][1000 genomes]
rs1958381	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2003997	0.91[EUR][1000 genomes]
rs2094659	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs2225269	0.93[EUR][1000 genomes]
rs2332465	0.81[EUR][1000 genomes]
rs35106416	0.82[EUR][1000 genomes]
rs4522329	0.91[EUR][1000 genomes]
rs57426267	0.82[EUR][1000 genomes]
rs57614343	0.82[EUR][1000 genomes]
rs58205855	0.82[ASN][1000 genomes]
rs58590969	0.85[EUR][1000 genomes]
rs60864714	0.83[AMR][1000 genomes]
rs61979908	0.81[EUR][1000 genomes]
rs61979911	0.81[EUR][1000 genomes]
rs61979914	0.82[EUR][1000 genomes]
rs6574172	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147345	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7152812	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs7153837	0.91[CEU][hapmap];0.90[GIH][hapmap];0.96[TSI][hapmap];0.82[EUR][1000 genomes]
rs7154613	0.82[EUR][1000 genomes]
rs7155485	0.81[CEU][hapmap]
rs726519	0.85[YRI][hapmap]
rs8004566	0.82[EUR][1000 genomes]
rs8007052	0.87[ASW][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs8008544	0.81[EUR][1000 genomes]
rs8008618	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs8009099	0.91[CEU][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.96[TSI][hapmap];0.82[EUR][1000 genomes]
rs8020392	0.82[ASW][hapmap];0.85[YRI][hapmap]
rs873103	0.93[EUR][1000 genomes]
rs913684	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1958383	NRL	cis	parietal	SCAN
rs1958383	DHRS1	cis	parietal	SCAN
rs1958383	PRMT5	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25521600-25534400	Weak transcription	Pancreas	Pancrea
2	chr14:25524800-25527200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:25525000-25527000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr14:25525000-25527200	Enhancers	NHLF	lung
5	chr14:25526000-25527000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr14:25526000-25527200	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links