Variant report

Variant	rs1958562
Chromosome Location	chr14:66032102-66032103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66025175..66028940-chr14:66031643..66034367,3	MCF-7	breast:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10129187	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10129472	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs10129732	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10130560	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10133167	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10133902	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10133903	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10135594	0.93[EUR][1000 genomes]
rs10135934	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10136412	0.93[EUR][1000 genomes]
rs10136763	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10141293	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10143822	0.93[EUR][1000 genomes]
rs10145561	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10145993	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10145996	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10146179	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10151921	1.00[CEU][hapmap];0.84[JPT][hapmap];0.93[EUR][1000 genomes]
rs10162379	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10162474	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10162506	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10220303	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10220304	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10483775	0.93[EUR][1000 genomes]
rs10483779	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10483784	1.00[CEU][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12587616	0.82[EUR][1000 genomes]
rs12588029	1.00[CEU][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13379147	1.00[CEU][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13379229	1.00[CEU][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17102686	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17102757	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17102836	1.00[CEU][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes]
rs17102844	1.00[CEU][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes]
rs17102896	1.00[JPT][hapmap]
rs17102920	0.93[EUR][1000 genomes]
rs17181798	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17779061	1.00[AMR][1000 genomes]
rs17779571	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1813030	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1950559	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1953419	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1959146	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1959147	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1959148	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2002691	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2092915	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2411814	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2411818	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2411819	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28373922	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28390075	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28427101	0.93[EUR][1000 genomes]
rs28430347	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28452027	0.93[EUR][1000 genomes]
rs28694288	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28695252	0.93[EUR][1000 genomes]
rs28823043	0.93[EUR][1000 genomes]
rs28830595	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28871950	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2898817	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2898819	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3783707	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3783712	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4516142	1.00[CEU][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs45549535	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57638372	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58170348	0.93[EUR][1000 genomes]
rs59970730	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6573623	1.00[CEU][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes]
rs7140251	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7141326	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7145319	1.00[CEU][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes]
rs7145834	1.00[CEU][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7148401	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7151690	0.92[JPT][hapmap]
rs7160505	1.00[CEU][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73284130	0.93[EUR][1000 genomes]
rs73284149	0.93[EUR][1000 genomes]
rs73284201	0.93[EUR][1000 genomes]
rs8003664	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8014146	1.00[CEU][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8015947	1.00[CEU][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8017901	0.93[EUR][1000 genomes]
rs9323462	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323464	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs945319	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9972109	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv974468	chr14:66027622-66038354	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65995400-66061000	Weak transcription	Gastric	stomach
2	chr14:66003800-66041200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:66015200-66033600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr14:66016000-66032800	Weak transcription	Small Intestine	intestine
5	chr14:66016000-66041400	Weak transcription	Ovary	ovary
6	chr14:66016600-66033800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:66021400-66046400	Weak transcription	Thymus	Thymus
8	chr14:66021800-66043000	Weak transcription	Fetal Intestine Small	intestine
9	chr14:66022400-66033400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:66022400-66042200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:66022400-66047800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr14:66022400-66052400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:66022800-66032800	Weak transcription	Adipose Nuclei	Adipose
14	chr14:66022800-66037000	Weak transcription	Stomach Mucosa	stomach
15	chr14:66023200-66033000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:66023200-66037400	Weak transcription	Brain Hippocampus Middle	brain
17	chr14:66023200-66040200	Weak transcription	Lung	lung
18	chr14:66023200-66052000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:66023200-66054400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr14:66023400-66032800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:66023600-66038200	Weak transcription	Brain Substantia Nigra	brain
22	chr14:66025400-66040400	Weak transcription	Fetal Lung	lung
23	chr14:66025600-66033000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr14:66026200-66040600	Weak transcription	Brain Angular Gyrus	brain
25	chr14:66026400-66033600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr14:66026400-66036600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr14:66026600-66033200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr14:66026800-66033800	Weak transcription	Osteobl	bone
29	chr14:66026800-66042200	Weak transcription	Placenta	Placenta
30	chr14:66026800-66048800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr14:66027600-66033000	Weak transcription	Colon Smooth Muscle	Colon
32	chr14:66027600-66036600	Weak transcription	Brain Anterior Caudate	brain
33	chr14:66027600-66037200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr14:66027600-66044200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:66027800-66041800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr14:66028000-66034200	Strong transcription	Primary B cells from cord blood	blood
37	chr14:66028000-66039600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr14:66028600-66032800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr14:66028600-66042400	Weak transcription	NH-A	brain
40	chr14:66028800-66039200	Weak transcription	Fetal Thymus	thymus
41	chr14:66028800-66040800	Weak transcription	Left Ventricle	heart
42	chr14:66028800-66042600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr14:66028800-66044200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr14:66029000-66039800	Weak transcription	Fetal Intestine Large	intestine
45	chr14:66029800-66033200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr14:66029800-66039600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr14:66030200-66033600	ZNF genes & repeats	GM12878-XiMat	blood
48	chr14:66030200-66040200	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr14:66030200-66040800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr14:66031000-66032800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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