Variant report

Variant	rs1961836
Chromosome Location	chr4:143629150-143629151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143537607..143539576-chr4:143628828..143631506,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1031104	0.86[ASN][1000 genomes]
rs11100754	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1116690	0.82[ASN][1000 genomes]
rs11944455	0.85[ASN][1000 genomes]
rs12233703	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500698	0.82[ASN][1000 genomes]
rs12644329	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13109603	0.86[ASN][1000 genomes]
rs13109664	0.86[ASN][1000 genomes]
rs13119090	0.86[ASN][1000 genomes]
rs13141925	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13435565	0.81[EUR][1000 genomes]
rs1364922	0.84[ASN][1000 genomes]
rs1373032	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1373036	0.85[ASN][1000 genomes]
rs1373041	0.82[ASN][1000 genomes]
rs1443185	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1443186	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1443187	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17732791	0.83[EUR][1000 genomes]
rs179508	0.85[EUR][1000 genomes]
rs191762	0.84[EUR][1000 genomes]
rs1992417	0.82[EUR][1000 genomes]
rs1992418	0.83[EUR][1000 genomes]
rs28420913	0.81[EUR][1000 genomes]
rs3113593	0.87[EUR][1000 genomes]
rs331948	0.85[EUR][1000 genomes]
rs331949	0.85[EUR][1000 genomes]
rs331950	0.85[EUR][1000 genomes]
rs331951	0.87[EUR][1000 genomes]
rs331963	0.85[EUR][1000 genomes]
rs34442253	0.83[EUR][1000 genomes]
rs4690698	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4690699	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6537123	0.87[ASN][1000 genomes]
rs6537124	0.85[EUR][1000 genomes]
rs6813458	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6816424	0.82[EUR][1000 genomes]
rs6819498	0.81[EUR][1000 genomes]
rs6830053	0.86[ASN][1000 genomes]
rs6830886	0.82[ASN][1000 genomes]
rs6831927	0.81[EUR][1000 genomes]
rs6839894	0.86[ASN][1000 genomes]
rs6844306	0.81[EUR][1000 genomes]
rs6845583	0.81[EUR][1000 genomes]
rs6852570	0.85[EUR][1000 genomes]
rs7434705	0.86[ASN][1000 genomes]
rs7441478	0.86[ASN][1000 genomes]
rs7680076	0.86[ASN][1000 genomes]
rs7680631	0.86[ASN][1000 genomes]
rs7695514	0.86[ASN][1000 genomes]
rs7698691	0.83[ASN][1000 genomes]
rs966457	0.84[EUR][1000 genomes]
rs979194	0.84[ASN][1000 genomes]
rs979195	0.84[ASN][1000 genomes]
rs979196	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143616800-143629600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr4:143620800-143642000	Weak transcription	Fetal Heart	heart
3	chr4:143622200-143629200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:143624400-143629400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr4:143625200-143629600	Weak transcription	Aorta	Aorta
6	chr4:143625200-143641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:143625400-143629800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:143627200-143630600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr4:143627400-143629600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:143628200-143629600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
11	chr4:143628200-143630600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:143628200-143631600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:143628200-143631600	ZNF genes & repeats	Dnd41	blood
14	chr4:143628600-143630400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
15	chr4:143628800-143629600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr4:143628800-143629800	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr4:143628800-143630200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
18	chr4:143628800-143631000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
19	chr4:143628800-143631400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr4:143628800-143632000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
21	chr4:143629000-143629200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr4:143629000-143629200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
23	chr4:143629000-143629200	ZNF genes & repeats	Fetal Thymus	thymus
24	chr4:143629000-143629400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr4:143629000-143629600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr4:143629000-143629800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
27	chr4:143629000-143630000	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links