Variant report

Variant	rs1964081
Chromosome Location	chr2:180591421-180591422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10177883	0.87[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs12467122	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs13407248	0.86[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1462208	0.81[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap]
rs1515294	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16866934	0.82[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs16866936	0.87[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.80[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs16866942	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16866943	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16866944	0.94[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16866945	0.94[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16866953	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs17496658	0.86[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs17499149	0.82[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs17499156	0.87[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs2840142	0.86[EUR][1000 genomes]
rs56142641	0.86[EUR][1000 genomes]
rs58143036	0.87[EUR][1000 genomes]
rs59431424	0.85[EUR][1000 genomes]
rs59642995	0.84[ASN][1000 genomes]
rs61200535	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73973703	0.87[EUR][1000 genomes]
rs746701	0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs7559882	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7582108	0.81[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs7584651	0.85[ASN][1000 genomes]
rs7584968	0.85[ASN][1000 genomes]
rs881737	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv979379	chr2:180589246-180596723	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180591000-180591800	Enhancers	Placenta Amnion	Placenta Amnion

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