Variant report

Variant	rs1965090
Chromosome Location	chr2:183405046-183405047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10460375	0.84[ASN][1000 genomes]
rs1978650	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183404200-183411800	Weak transcription	Fetal Brain Male	brain
2	chr2:183404400-183406800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr2:183404600-183405200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:183404600-183406600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:183404600-183407400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:183404800-183406600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:183404800-183406800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr2:183404800-183408200	Weak transcription	Brain Substantia Nigra	brain
9	chr2:183405000-183405200	Enhancers	Colon Smooth Muscle	Colon
10	chr2:183405000-183406000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr2:183405000-183406200	Enhancers	Primary hematopoietic stem cells	blood
12	chr2:183405000-183406200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links