Variant report

Variant	rs1965152
Chromosome Location	chr11:76625989-76625990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11237021	0.82[AMR][1000 genomes]
rs4264179	0.88[AMR][1000 genomes]
rs7129222	0.81[AMR][1000 genomes]
rs7948198	0.86[AMR][1000 genomes]
rs7948334	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76597000-76631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:76613600-76631200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:76615600-76631200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:76617800-76630000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:76617800-76630000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:76618200-76637600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:76618600-76629800	Weak transcription	A549	lung
8	chr11:76618600-76630000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:76622600-76630000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:76622600-76631200	Weak transcription	Spleen	Spleen
11	chr11:76622800-76627400	Weak transcription	K562	blood
12	chr11:76622800-76629600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:76622800-76631200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:76623000-76630000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:76623400-76629200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:76624000-76626400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:76624200-76629000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:76625400-76627800	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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