Variant report

Variant	rs1970014
Chromosome Location	chr9:110517130-110517131
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110300257..110302612-chr9:110514562..110517473,2	MCF-7	breast:
2	chr9:110515788..110518055-chr9:110572897..110574723,2	MCF-7	breast:
3	chr9:110246450..110254025-chr9:110510483..110522079,28	MCF-7	breast:
4	chr9:110246498..110248989-chr9:110515168..110518438,3	MCF-7	breast:
5	chr9:110241813..110245896-chr9:110516233..110519941,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244104	Chromatin interaction
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10759258	0.83[ASN][1000 genomes]
rs10979040	0.90[ASN][1000 genomes]
rs1330149	0.83[ASN][1000 genomes]
rs1411357	0.83[ASN][1000 genomes]
rs1467311	0.87[ASN][1000 genomes]
rs1831382	0.86[ASN][1000 genomes]
rs2104759	0.90[ASN][1000 genomes]
rs2140480	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2140483	0.90[ASN][1000 genomes]
rs4979370	0.82[ASN][1000 genomes]
rs6477599	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs944172	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv520911	chr9:110504358-110517794	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110512400-110517200	Weak transcription	Lung	lung
2	chr9:110512400-110518000	Weak transcription	Spleen	Spleen
3	chr9:110512400-110520000	Weak transcription	Psoas Muscle	Psoas
4	chr9:110514400-110517400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:110514600-110517200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:110514600-110517200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:110514600-110517200	Weak transcription	NHDF-Ad	bronchial
8	chr9:110514600-110517400	Weak transcription	Adipose Nuclei	Adipose
9	chr9:110514600-110517400	Weak transcription	Fetal Brain Male	brain
10	chr9:110514600-110517400	Weak transcription	NH-A	brain
11	chr9:110514600-110517600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:110514600-110523200	Weak transcription	K562	blood
13	chr9:110514800-110517200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:110514800-110517200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:110514800-110517200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr9:110514800-110517200	Weak transcription	HSMM	muscle
17	chr9:110514800-110517200	Weak transcription	HSMMtube	muscle
18	chr9:110514800-110517200	Weak transcription	NHLF	lung
19	chr9:110514800-110517200	Weak transcription	Osteobl	bone
20	chr9:110514800-110517400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr9:110514800-110517400	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:110514800-110517400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr9:110514800-110522600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:110515000-110517200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:110515200-110517200	Weak transcription	Fetal Intestine Large	intestine
26	chr9:110515200-110517200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr9:110515400-110517200	Weak transcription	Fetal Intestine Small	intestine
28	chr9:110515400-110517200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr9:110515400-110517400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr9:110515400-110517800	Weak transcription	Stomach Mucosa	stomach
31	chr9:110515400-110523000	Weak transcription	Left Ventricle	heart
32	chr9:110515800-110517200	Weak transcription	HUVEC	blood vessel
33	chr9:110516200-110518600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:110516600-110517200	Enhancers	Hela-S3	cervix
35	chr9:110516800-110517400	Enhancers	A549	lung
36	chr9:110516800-110518200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:110516800-110518200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr9:110516800-110518200	Enhancers	HMEC	breast
39	chr9:110516800-110518400	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr9:110516800-110518400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr9:110516800-110518400	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr9:110516800-110518400	Enhancers	NHEK	skin
43	chr9:110517000-110517400	Enhancers	Muscle Satellite Cultured Cells	--
44	chr9:110517000-110517800	Enhancers	Small Intestine	intestine
45	chr9:110517000-110518200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr9:110517000-110518400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:110517000-110519600	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links