The 2.0 version of rSNPBase

Variant report

Variant rs1971374
Chromosome Location chr17:43659738-43659739
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43640800-43660200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
2 chr17:43646000-43660200 Weak transcription Primary B cells from peripheral blood blood
3 chr17:43649800-43660200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr17:43651200-43660800 Weak transcription Aorta Aorta
5 chr17:43651800-43659800 Weak transcription Fetal Lung lung
6 chr17:43652400-43660400 Weak transcription Adipose Nuclei Adipose
7 chr17:43652400-43660400 Weak transcription Fetal Intestine Large intestine
8 chr17:43652600-43660400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
9 chr17:43652600-43660400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr17:43652600-43661400 Weak transcription Ovary ovary
11 chr17:43652800-43660400 Weak transcription NH-A brain
12 chr17:43652800-43661000 Weak transcription HSMMtube muscle
13 chr17:43653000-43660400 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr17:43653000-43661000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr17:43653000-43661000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr17:43653000-43661200 Weak transcription Lung lung
17 chr17:43653200-43660200 Weak transcription Stomach Smooth Muscle stomach
18 chr17:43653200-43661000 Weak transcription Osteobl bone
19 chr17:43653400-43661800 Weak transcription Spleen Spleen
20 chr17:43654800-43660400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr17:43654800-43660400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr17:43654800-43660800 Weak transcription H9 Cell Line embryonic stem cell
23 chr17:43655000-43660400 Enhancers Primary T helper cells PMA-I stimulated --
24 chr17:43655600-43659800 Strong transcription Primary B cells from cord blood blood
25 chr17:43656400-43659800 Strong transcription Fetal Muscle Trunk muscle
26 chr17:43656400-43660200 Transcr. at gene 5' and 3' GM12878-XiMat blood
27 chr17:43656400-43660400 Genic enhancers iPS-18 Cell Line embryonic stem cell
28 chr17:43656600-43661000 Weak transcription Left Ventricle heart
29 chr17:43657000-43659800 Weak transcription Primary neutrophils fromperipheralblood blood
30 chr17:43657000-43660400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr17:43657000-43660400 Genic enhancers Hela-S3 cervix
32 chr17:43657200-43660400 Weak transcription HMEC breast
33 chr17:43657200-43660600 Weak transcription Right Atrium heart
34 chr17:43657200-43661000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
35 chr17:43657200-43661200 Weak transcription Small Intestine intestine
36 chr17:43657400-43660200 Weak transcription Muscle Satellite Cultured Cells --
37 chr17:43657400-43660600 Weak transcription Colonic Mucosa Colon
38 chr17:43657400-43661000 Weak transcription Esophagus oesophagus
39 chr17:43657400-43661000 Weak transcription Pancreas Pancrea
40 chr17:43657400-43661600 Weak transcription Gastric stomach
41 chr17:43657600-43660200 Genic enhancers Primary T helper memory cells from peripheral blood 2 blood
42 chr17:43657600-43660200 Weak transcription Duodenum Mucosa Duodenum
43 chr17:43657600-43660400 Weak transcription Rectal Mucosa Donor 31 rectum
44 chr17:43657600-43660600 Weak transcription iPS-15b Cell Line embryonic stem cell
45 chr17:43657600-43660800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr17:43657600-43661000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr17:43657600-43661000 Weak transcription Brain Cingulate Gyrus brain
48 chr17:43657600-43661000 Weak transcription Fetal Intestine Small intestine
49 chr17:43657600-43661000 Weak transcription Stomach Mucosa stomach
50 chr17:43657600-43661200 Weak transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015