Variant report

Variant	rs1978226
Chromosome Location	chr14:72461647-72461648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1009018	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10873248	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11158929	1.00[AFR][1000 genomes]
rs2109268	0.88[CEU][hapmap]
rs2190868	1.00[AFR][1000 genomes]
rs2190871	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2190874	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2215133	0.90[EUR][1000 genomes]
rs2332706	0.88[CEU][hapmap]
rs2877772	0.87[EUR][1000 genomes]
rs2877773	0.90[EUR][1000 genomes]
rs36319	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs36320	0.90[EUR][1000 genomes]
rs36322	0.90[EUR][1000 genomes]
rs36323	0.90[EUR][1000 genomes]
rs36324	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs36325	0.90[EUR][1000 genomes]
rs36328	0.90[EUR][1000 genomes]
rs36329	0.87[EUR][1000 genomes]
rs36330	0.90[EUR][1000 genomes]
rs36331	0.87[EUR][1000 genomes]
rs36333	0.90[EUR][1000 genomes]
rs36334	0.90[EUR][1000 genomes]
rs36337	0.90[EUR][1000 genomes]
rs36338	0.87[EUR][1000 genomes]
rs36339	0.90[EUR][1000 genomes]
rs36342	0.88[EUR][1000 genomes]
rs36343	0.88[EUR][1000 genomes]
rs36346	0.88[EUR][1000 genomes]
rs36347	0.88[EUR][1000 genomes]
rs36348	0.88[EUR][1000 genomes]
rs36349	0.88[EUR][1000 genomes]
rs36352	0.88[EUR][1000 genomes]
rs36353	0.88[EUR][1000 genomes]
rs36354	0.88[EUR][1000 genomes]
rs36355	0.88[EUR][1000 genomes]
rs36357	0.88[EUR][1000 genomes]
rs36358	0.84[EUR][1000 genomes]
rs36359	0.88[EUR][1000 genomes]
rs36362	0.88[EUR][1000 genomes]
rs4243639	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4598834	0.88[CEU][hapmap];0.97[EUR][1000 genomes]
rs4899406	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4899408	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4902959	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4902962	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4902967	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902968	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902969	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs4902970	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902972	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs61996396	0.90[EUR][1000 genomes]
rs6574036	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs7161413	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs722975	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs728494	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs728495	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs728498	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs757598	1.00[AFR][1000 genomes]
rs758235	1.00[AFR][1000 genomes]
rs758236	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs8003097	1.00[AFR][1000 genomes]
rs8004427	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8011972	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8014500	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8017353	1.00[AFR][1000 genomes]
rs917392	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9806063	0.81[EUR][1000 genomes]
rs991890	1.00[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72457400-72462000	Weak transcription	Right Ventricle	heart
2	chr14:72457600-72462000	Weak transcription	Left Ventricle	heart
3	chr14:72460800-72462200	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:72461000-72462600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:72461200-72462200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links