The 2.0 version of rSNPBase

Variant report

Variant rs1982894
Chromosome Location chr1:220956076-220956077
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220922800-220959600 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr1:220922800-220959600 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:220925000-220959400 Weak transcription Brain Angular Gyrus brain
4 chr1:220930000-220959600 Weak transcription Psoas Muscle Psoas
5 chr1:220930400-220959600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr1:220931200-220959000 Weak transcription Brain Substantia Nigra brain
7 chr1:220936200-220959600 Weak transcription A549 lung
8 chr1:220936600-220958200 Weak transcription Esophagus oesophagus
9 chr1:220939000-220960400 Weak transcription Small Intestine intestine
10 chr1:220943000-220958400 Weak transcription HepG2 liver
11 chr1:220943000-220959000 Strong transcription Fetal Intestine Large intestine
12 chr1:220944200-220959200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr1:220944200-220959400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr1:220944200-220959400 Weak transcription Fetal Kidney kidney
15 chr1:220944200-220959600 Weak transcription NHLF lung
16 chr1:220944200-220959800 Weak transcription Gastric stomach
17 chr1:220944400-220956800 Weak transcription Spleen Spleen
18 chr1:220944400-220958800 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr1:220944400-220959000 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr1:220944400-220959200 Weak transcription Rectal Smooth Muscle rectum
21 chr1:220944400-220959400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr1:220944400-220959400 Weak transcription Colonic Mucosa Colon
23 chr1:220944400-220959400 Weak transcription Right Ventricle heart
24 chr1:220945800-220959200 Weak transcription Colon Smooth Muscle Colon
25 chr1:220946000-220956800 Weak transcription Skeletal Muscle Male skeletal muscle
26 chr1:220946400-220956200 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr1:220946600-220958600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr1:220946800-220958800 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr1:220950200-220957800 Strong transcription Duodenum Mucosa Duodenum
30 chr1:220950200-220959200 Weak transcription Brain Cingulate Gyrus brain
31 chr1:220950400-220958000 Strong transcription Fetal Muscle Trunk muscle
32 chr1:220950400-220959400 Weak transcription Brain Inferior Temporal Lobe brain
33 chr1:220950600-220958000 Weak transcription iPS-18 Cell Line embryonic stem cell
34 chr1:220950600-220958800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
35 chr1:220950600-220959000 Weak transcription Fetal Heart heart
36 chr1:220950600-220959400 Weak transcription Right Atrium heart
37 chr1:220951200-220956800 Weak transcription Hela-S3 cervix
38 chr1:220952000-220957800 Strong transcription Fetal Lung lung
39 chr1:220952400-220958800 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr1:220953200-220957400 Strong transcription Duodenum Smooth Muscle Duodenum
41 chr1:220953200-220959600 Weak transcription Lung lung
42 chr1:220953400-220957800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr1:220953800-220956600 Weak transcription Fetal Adrenal Gland Adrenal Gland
44 chr1:220953800-220957400 Weak transcription Stomach Smooth Muscle stomach
45 chr1:220953800-220959200 Weak transcription Ovary ovary
46 chr1:220954000-220956600 Weak transcription Fetal Stomach stomach
47 chr1:220954000-220958200 Weak transcription Primary neutrophils fromperipheralblood blood
48 chr1:220954000-220958200 Weak transcription Adipose Nuclei Adipose
49 chr1:220954200-220956600 Weak transcription Fetal Intestine Small intestine
50 chr1:220954600-220957800 Strong transcription Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015