Variant report

Variant	rs1983222
Chromosome Location	chr10:52814118-52814119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10508935	0.85[EUR][1000 genomes]
rs10740111	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10740130	0.94[CEU][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes]
rs10761738	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761807	0.83[EUR][1000 genomes]
rs10761831	0.85[EUR][1000 genomes]
rs10822188	0.82[EUR][1000 genomes]
rs10822189	0.88[EUR][1000 genomes]
rs10822194	0.87[EUR][1000 genomes]
rs10822198	0.87[EUR][1000 genomes]
rs10822210	0.86[EUR][1000 genomes]
rs10822211	0.86[EUR][1000 genomes]
rs10822229	0.83[EUR][1000 genomes]
rs10995458	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10995473	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10995526	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10995620	0.86[EUR][1000 genomes]
rs10995651	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs10995655	0.85[EUR][1000 genomes]
rs12218335	0.88[EUR][1000 genomes]
rs12220644	0.85[EUR][1000 genomes]
rs12221226	0.86[EUR][1000 genomes]
rs12415785	0.85[EUR][1000 genomes]
rs12767015	0.83[EUR][1000 genomes]
rs16913257	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913956	0.85[EUR][1000 genomes]
rs2339675	0.87[EUR][1000 genomes]
rs2660202	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2666543	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3964605	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4622210	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55767509	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074892	0.90[EUR][1000 genomes]
rs7084128	0.88[EUR][1000 genomes]
rs7084767	0.82[CEU][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs7097311	0.88[EUR][1000 genomes]
rs7912628	0.88[EUR][1000 genomes]
rs9299457	0.90[EUR][1000 genomes]
rs9414806	0.88[CEU][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs9414808	0.87[EUR][1000 genomes]
rs9414810	0.88[EUR][1000 genomes]
rs9415709	0.88[EUR][1000 genomes]
rs9415710	0.88[EUR][1000 genomes]
rs9415711	0.88[EUR][1000 genomes]
rs9633564	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52807600-52821000	Weak transcription	Aorta	Aorta
2	chr10:52813200-52814400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:52814000-52814200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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