Variant report

Variant	rs1983259
Chromosome Location	chr1:211483320-211483321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr1:211482900-211483359	K562	blood:	n/a	n/a
2	TBP	chr1:211483082-211483329	K562	blood:	n/a	n/a
3	EP300	chr1:211482953-211483466	K562	blood:	n/a	n/a
4	ATF1	chr1:211483018-211483462	K562	blood:	n/a	n/a
5	POLR2A	chr1:211482940-211483425	K562	blood:	n/a	n/a
6	MAX	chr1:211483051-211483395	K562	blood:	n/a	n/a
7	GATA1	chr1:211482771-211483373	PBDE	blood:	n/a	n/a
8	TBL1XR1	chr1:211482882-211483357	K562	blood:	n/a	n/a
9	EP300	chr1:211482983-211483502	K562	blood:	n/a	n/a
10	ARID3A	chr1:211482670-211483354	K562	blood:	n/a	n/a
11	KAP1	chr1:211482853-211483573	K562	blood:	n/a	n/a
12	GATA2	chr1:211482918-211483370	K562	blood:	n/a	n/a
13	CBX3	chr1:211482928-211483514	K562	blood:	n/a	n/a
14	TAL1	chr1:211482904-211483366	K562	blood:	n/a	n/a
15	STAT5A	chr1:211482920-211483348	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:211478824..211485185-chr1:211486751..211490666,6	K562	blood:
2	chr1:211481961..211484354-chr1:211487300..211488898,2	K562	blood:
3	chr1:211470409..211472058-chr1:211482921..211484706,2	K562	blood:

No data

Variant related genes	Relation type
RCOR3	TF binding region

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10732682	1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746434	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10779554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10779555	1.00[ASN][1000 genomes]
rs1084977	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1084982	0.92[EUR][1000 genomes]
rs1084983	0.96[EUR][1000 genomes]
rs1084986	0.89[EUR][1000 genomes]
rs10863886	1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10863887	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11804635	0.85[EUR][1000 genomes]
rs12043438	1.00[ASN][1000 genomes]
rs12057566	1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs12063878	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1533219	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1533220	0.82[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1663521	0.92[EUR][1000 genomes]
rs1707247	0.92[EUR][1000 genomes]
rs1707252	1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs1707266	1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs1707267	0.92[EUR][1000 genomes]
rs1877476	0.96[EUR][1000 genomes]
rs1983260	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2358215	1.00[CHB][hapmap];0.84[YRI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2358217	0.86[AFR][1000 genomes]
rs2588658	0.85[EUR][1000 genomes]
rs2995846	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3111242	1.00[ASN][1000 genomes]
rs3111247	1.00[ASN][1000 genomes]
rs3111248	1.00[ASN][1000 genomes]
rs3111250	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3111254	1.00[ASN][1000 genomes]
rs3111256	1.00[ASN][1000 genomes]
rs3120784	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3123302	0.96[EUR][1000 genomes]
rs3125828	1.00[CHB][hapmap];0.81[LWK][hapmap];1.00[ASN][1000 genomes]
rs3125829	1.00[CHB][hapmap];0.81[LWK][hapmap];1.00[ASN][1000 genomes]
rs3125834	1.00[ASN][1000 genomes]
rs3125840	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3125841	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3855878	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278412	0.82[AFR][1000 genomes]
rs4279906	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4281373	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4347268	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4370817	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4396171	1.00[ASN][1000 genomes]
rs4556425	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951517	1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951521	0.86[MKK][hapmap]
rs4951735	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951737	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951738	1.00[CHB][hapmap];0.84[YRI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951739	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951740	1.00[CHB][hapmap];0.84[YRI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61218213	1.00[ASN][1000 genomes]
rs6540675	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540676	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540678	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540681	0.86[YRI][hapmap]
rs6657779	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661043	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6663627	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6671526	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672233	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6688682	1.00[CHB][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6692815	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6698113	0.86[MKK][hapmap]
rs73072839	0.85[EUR][1000 genomes]
rs7517135	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7527620	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs784366	1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs784367	0.88[EUR][1000 genomes]
rs784368	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs784370	0.92[EUR][1000 genomes]
rs784371	0.81[EUR][1000 genomes]
rs784373	0.88[EUR][1000 genomes]
rs784374	0.82[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs784375	1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs784377	0.81[MKK][hapmap]
rs784378	1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs784380	1.00[GIH][hapmap];0.82[MEX][hapmap];0.92[EUR][1000 genomes]
rs784381	0.92[EUR][1000 genomes]
rs784387	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs784388	0.96[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211434400-211487000	Weak transcription	Gastric	stomach
2	chr1:211440800-211483600	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr1:211443200-211484000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:211444800-211491200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:211445800-211486800	Weak transcription	Esophagus	oesophagus
6	chr1:211447800-211486200	Weak transcription	Stomach Mucosa	stomach
7	chr1:211455000-211486800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:211456600-211486000	Weak transcription	Small Intestine	intestine
9	chr1:211461200-211499600	Weak transcription	Psoas Muscle	Psoas
10	chr1:211461400-211499600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:211461600-211499600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:211465600-211486800	Weak transcription	Pancreas	Pancrea
13	chr1:211465800-211486800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:211466200-211485800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr1:211466800-211486000	Weak transcription	Aorta	Aorta
16	chr1:211467000-211483800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:211467000-211486800	Weak transcription	Spleen	Spleen
18	chr1:211467200-211486600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr1:211467200-211493800	Weak transcription	Fetal Brain Male	brain
20	chr1:211467400-211485600	Weak transcription	Brain Angular Gyrus	brain
21	chr1:211467600-211486000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr1:211467800-211486200	Weak transcription	Brain Substantia Nigra	brain
23	chr1:211467800-211494200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr1:211468000-211485800	Weak transcription	Colon Smooth Muscle	Colon
25	chr1:211469400-211485600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr1:211470000-211486000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr1:211472000-211485600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr1:211472000-211486600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr1:211472000-211487000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr1:211473800-211486000	Weak transcription	Lung	lung
31	chr1:211473800-211486600	Weak transcription	Fetal Intestine Small	intestine
32	chr1:211473800-211486600	Weak transcription	Fetal Stomach	stomach
33	chr1:211474200-211486200	Weak transcription	Colonic Mucosa	Colon
34	chr1:211474400-211485600	Weak transcription	Ovary	ovary
35	chr1:211474400-211486000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr1:211474400-211486200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:211474800-211486200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr1:211474800-211497000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr1:211475800-211485600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr1:211476800-211485600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr1:211477000-211485600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr1:211477200-211485600	Weak transcription	Brain Hippocampus Middle	brain
43	chr1:211477200-211485800	Weak transcription	HSMMtube	muscle
44	chr1:211477600-211485600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr1:211477600-211486000	Weak transcription	Brain Germinal Matrix	brain
46	chr1:211477800-211485400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr1:211477800-211485800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr1:211477800-211486400	Weak transcription	HMEC	breast
49	chr1:211478200-211485600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr1:211478200-211485600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links