Variant report

Variant rs1983974
Chromosome Location chr20:25530619-25530620
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25498200-25532200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr20:25517800-25554600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr20:25520000-25532000 Weak transcription Dnd41 blood
4 chr20:25521400-25532200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr20:25521400-25534200 Weak transcription Brain Inferior Temporal Lobe brain
6 chr20:25521600-25565000 Weak transcription Aorta Aorta
7 chr20:25524400-25565000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr20:25524800-25531600 Enhancers Fetal Lung lung
9 chr20:25525000-25535400 Enhancers Fetal Heart heart
10 chr20:25526200-25534400 Weak transcription Brain Substantia Nigra brain
11 chr20:25526400-25543600 Weak transcription Fetal Brain Female brain
12 chr20:25526600-25534200 Weak transcription Brain Hippocampus Middle brain
13 chr20:25526600-25540200 Weak transcription ES-WA7 Cell Line embryonic stem cell
14 chr20:25527800-25530800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr20:25527800-25532200 Weak transcription HUES48 Cell Line embryonic stem cell
16 chr20:25528200-25531200 Weak transcription H9 Cell Line embryonic stem cell
17 chr20:25528600-25531200 Enhancers Esophagus oesophagus
18 chr20:25528800-25531000 Enhancers Gastric stomach
19 chr20:25528800-25531000 Enhancers Spleen Spleen
20 chr20:25528800-25531200 Enhancers Primary Natural Killer cells fromperipheralblood blood
21 chr20:25529000-25531000 Enhancers Lung lung
22 chr20:25529000-25531200 Enhancers Stomach Mucosa stomach
23 chr20:25529000-25532600 Enhancers Fetal Intestine Large intestine
24 chr20:25529000-25535600 Enhancers Fetal Adrenal Gland Adrenal Gland
25 chr20:25529200-25531000 Enhancers Hela-S3 cervix
26 chr20:25529200-25531200 Enhancers Ovary ovary
27 chr20:25529200-25531400 Enhancers Fetal Intestine Small intestine
28 chr20:25529400-25531200 Enhancers Breast Myoepithelial Primary Cells Breast
29 chr20:25529400-25531400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
30 chr20:25529600-25533800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr20:25529600-25534200 Weak transcription Thymus Thymus
32 chr20:25529800-25530800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr20:25529800-25530800 Enhancers Muscle Satellite Cultured Cells --
34 chr20:25529800-25530800 Enhancers Sigmoid Colon Sigmoid Colon
35 chr20:25529800-25531000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
36 chr20:25529800-25531000 Enhancers NHLF lung
37 chr20:25529800-25531200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr20:25529800-25531200 Enhancers Fetal Muscle Trunk muscle
39 chr20:25529800-25531200 Enhancers Fetal Muscle Leg muscle
40 chr20:25529800-25533000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr20:25530000-25530800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr20:25530000-25530800 Enhancers Fetal Kidney kidney
43 chr20:25530000-25531000 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr20:25530000-25531000 Enhancers Liver Liver
45 chr20:25530000-25531000 Enhancers Osteobl bone
46 chr20:25530000-25531200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
47 chr20:25530000-25531200 Enhancers Duodenum Smooth Muscle Duodenum
48 chr20:25530000-25531600 Enhancers Right Atrium heart
49 chr20:25530000-25531600 Enhancers Stomach Smooth Muscle stomach
50 chr20:25530000-25532800 Enhancers H1 Cell Line embryonic stem cell

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