Variant report

Variant	rs1985338
Chromosome Location	chr1:224796045-224796046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR26-1	chr1:224795999-224799294	XLOC_001228
2	lnc-WDR26-1	chr1:224795999-224799294	XLOC_001228

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1106233	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12077707	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12079156	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12089565	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12091093	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12092532	0.83[EUR][1000 genomes]
rs12096245	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12565092	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1499289	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1499291	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1499293	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1532557	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16850786	0.80[EUR][1000 genomes]
rs58725094	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60500269	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61827075	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61827076	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6695864	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73115953	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73115958	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7415393	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs883116	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs969025	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224794000-224796200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr1:224794400-224796200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr1:224794400-224796200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:224794400-224796200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:224794400-224796600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:224794400-224797000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:224794600-224796600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:224795400-224797600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:224795800-224802000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:224796000-224796200	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr1:224796000-224796800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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