Variant report

Variant	rs1986090
Chromosome Location	chr9:72578110-72578111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10511975	0.80[ASN][1000 genomes]
rs10868263	0.80[ASN][1000 genomes]
rs11140964	0.83[ASN][1000 genomes]
rs11141099	0.89[ASN][1000 genomes]
rs11141100	0.89[ASN][1000 genomes]
rs11515713	0.80[ASN][1000 genomes]
rs12379494	0.80[ASN][1000 genomes]
rs13287281	0.89[ASN][1000 genomes]
rs1907961	0.81[ASN][1000 genomes]
rs2220735	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35253810	0.89[ASN][1000 genomes]
rs4744581	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744963	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4744964	0.91[ASN][1000 genomes]
rs7846994	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs902963	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72576800-72580400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr9:72576800-72580600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:72577000-72578600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:72577000-72580400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr9:72577200-72578200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:72577200-72578400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:72577200-72578400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:72577200-72578600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:72577200-72578600	Weak transcription	NH-A	brain
10	chr9:72577200-72578600	Weak transcription	NHDF-Ad	bronchial
11	chr9:72577200-72578600	Weak transcription	NHLF	lung
12	chr9:72577200-72578600	Weak transcription	Osteobl	bone
13	chr9:72577200-72579000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:72577200-72579800	Weak transcription	HMEC	breast
15	chr9:72577200-72580000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:72577200-72584400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:72577400-72578400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr9:72577600-72578600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr9:72577600-72580000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:72577800-72578200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr9:72577800-72579400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:72577800-72579800	Weak transcription	NHEK	skin
23	chr9:72577800-72580400	Enhancers	H1 Cell Line	embryonic stem cell
24	chr9:72578000-72578400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr9:72578000-72578600	Enhancers	Brain Germinal Matrix	brain

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