Variant report

Variant	rs1988983
Chromosome Location	chr1:172849027-172849028
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10737295	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912487	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12037781	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17371133	0.82[ASN][1000 genomes]
rs2422257	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4916282	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs5028523	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61828367	0.82[ASN][1000 genomes]
rs6425162	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6664499	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672265	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673011	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7527986	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7528161	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7539319	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172840600-172855200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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