Variant report

Variant	rs1989172
Chromosome Location	chr2:37526020-37526021
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37514958..37517791-chr2:37524981..37527545,2	K562	blood:
2	chr2:37525680..37527961-chr2:37550440..37552019,2	K562	blood:
3	chr2:37521665..37524333-chr2:37525005..37526903,2	K562	blood:

Variant related genes	Relation type
ENSG00000115825	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10177176	0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs10190959	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs1056021	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs11124574	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs11124578	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1158218	0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs1158219	0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs11682607	0.90[ASN][1000 genomes]
rs11685805	0.83[ASN][1000 genomes]
rs11689794	0.84[ASN][1000 genomes]
rs11893943	0.83[ASN][1000 genomes]
rs12616151	0.83[ASN][1000 genomes]
rs12618410	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs12712532	0.83[ASN][1000 genomes]
rs13015451	0.84[ASN][1000 genomes]
rs13420463	0.93[ASN][1000 genomes]
rs1477055	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs17020386	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17020490	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2041836	0.83[ASN][1000 genomes]
rs2268987	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2300881	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2300884	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2300893	0.80[ASN][1000 genomes]
rs3770757	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3770759	0.82[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs4581878	0.92[ASN][1000 genomes]
rs4670194	0.91[ASN][1000 genomes]
rs4670195	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4670688	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs4670689	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs4998429	0.81[JPT][hapmap]
rs56774710	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57361399	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6544066	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs67467920	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs71398224	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72792829	0.89[ASN][1000 genomes]
rs74177070	0.90[ASN][1000 genomes]
rs7568510	0.82[ASN][1000 genomes]
rs7570547	0.84[ASN][1000 genomes]
rs7584565	0.83[ASN][1000 genomes]
rs9309004	0.82[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
2	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
3	chr2:37482800-37528600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:37484200-37539000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:37484600-37550400	Weak transcription	Right Ventricle	heart
6	chr2:37487200-37528600	Weak transcription	Brain Substantia Nigra	brain
7	chr2:37499400-37528600	Weak transcription	Brain Anterior Caudate	brain
8	chr2:37499400-37540200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr2:37500200-37529800	Weak transcription	Fetal Intestine Small	intestine
10	chr2:37500200-37530200	Weak transcription	Gastric	stomach
11	chr2:37500600-37530200	Weak transcription	Thymus	Thymus
12	chr2:37502200-37528200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:37502200-37528600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:37502600-37528600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr2:37502600-37532600	Weak transcription	Small Intestine	intestine
16	chr2:37502600-37533000	Weak transcription	Psoas Muscle	Psoas
17	chr2:37502600-37535800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:37502800-37528800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr2:37502800-37528800	Weak transcription	Brain Hippocampus Middle	brain
20	chr2:37502800-37533800	Weak transcription	Lung	lung
21	chr2:37502800-37543400	Weak transcription	Esophagus	oesophagus
22	chr2:37509000-37550800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr2:37509600-37528600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr2:37509600-37539000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr2:37510200-37526600	Weak transcription	K562	blood
26	chr2:37510600-37536600	Weak transcription	Placenta	Placenta
27	chr2:37510800-37532200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr2:37511000-37533600	Weak transcription	Left Ventricle	heart
29	chr2:37511000-37550800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:37511200-37530200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr2:37511200-37534600	Weak transcription	HSMMtube	muscle
32	chr2:37511800-37528600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr2:37513600-37543200	Weak transcription	NHLF	lung
34	chr2:37515600-37527800	Weak transcription	A549	lung
35	chr2:37515600-37530200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr2:37515600-37539000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr2:37515800-37545400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr2:37516000-37528600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr2:37516600-37526400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr2:37516600-37528600	Weak transcription	NHDF-Ad	bronchial
41	chr2:37516600-37532800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr2:37516800-37545200	Weak transcription	Fetal Kidney	kidney
43	chr2:37517400-37542400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr2:37517600-37537800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr2:37518200-37539600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr2:37518800-37532600	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr2:37518800-37539000	Weak transcription	Fetal Lung	lung
48	chr2:37518800-37545400	Weak transcription	NH-A	brain
49	chr2:37519000-37526200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr2:37519000-37527200	Weak transcription	HMEC	breast

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