The 2.0 version of rSNPBase

Variant report

Variant rs1989653
Chromosome Location chr5:60390090-60390091
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:30 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60326000-60400800 Weak transcription Left Ventricle heart
2 chr5:60350800-60396200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr5:60366400-60397400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr5:60367400-60399400 Weak transcription Primary T helper cells fromperipheralblood blood
5 chr5:60367600-60398400 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr5:60367800-60403800 Weak transcription Primary B cells from cord blood blood
7 chr5:60368200-60390600 Weak transcription Fetal Intestine Small intestine
8 chr5:60368200-60397600 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr5:60368200-60402000 Weak transcription Stomach Smooth Muscle stomach
10 chr5:60368400-60390200 Weak transcription Brain Inferior Temporal Lobe brain
11 chr5:60369000-60400200 Weak transcription Fetal Muscle Trunk muscle
12 chr5:60369800-60396400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr5:60370200-60395600 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr5:60371600-60398000 Weak transcription HSMM muscle
15 chr5:60373200-60395600 Weak transcription Primary hematopoietic stem cells short term culture blood
16 chr5:60378800-60395600 Weak transcription Primary T cells from cord blood blood
17 chr5:60378800-60403400 Weak transcription Brain Hippocampus Middle brain
18 chr5:60379400-60395600 Weak transcription Ovary ovary
19 chr5:60379400-60403000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr5:60381000-60419400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr5:60381400-60397600 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr5:60383000-60395600 Weak transcription Breast Myoepithelial Primary Cells Breast
23 chr5:60387200-60395600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr5:60387600-60391200 Weak transcription Spleen Spleen
25 chr5:60387800-60395600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr5:60387800-60396200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr5:60388000-60394000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr5:60388200-60399200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr5:60388400-60401400 Weak transcription Fetal Intestine Large intestine
30 chr5:60389600-60396200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015