Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112287931..112290742-chr7:112293869..112296163,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10232659	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10233896	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10249203	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261844	0.83[AMR][1000 genomes]
rs10278994	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10280916	0.83[AMR][1000 genomes]
rs11761491	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763053	0.83[ASN][1000 genomes]
rs11763216	0.86[ASN][1000 genomes]
rs17581732	0.86[ASN][1000 genomes]
rs1989835	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582492	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56376790	0.83[AMR][1000 genomes]
rs62475002	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62475004	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73436435	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs756867	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs756868	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs756869	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796920	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7804823	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112295200-112301000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:112295400-112305800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search: