Variant report

Variant	rs199709145
Chromosome Location	chr3:54461079-54461080
allele	-/CTTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv817210	chr3:54365684-54511164	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1010348	chr3:54435563-54508115	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876807	chr3:54453655-54501086	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv998970	chr3:54455794-54516789	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv876808	chr3:54459688-54501086	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv876809	chr3:54459688-54501086	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54458200-54463000	Enhancers	Hela-S3	cervix
2	chr3:54458800-54461600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:54458800-54461600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:54458800-54461800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:54458800-54461800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:54458800-54462600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:54459800-54461400	Enhancers	Brain Germinal Matrix	brain
8	chr3:54459800-54462400	Enhancers	Colon Smooth Muscle	Colon
9	chr3:54460000-54462400	Enhancers	HSMMtube	muscle
10	chr3:54460200-54461200	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:54460400-54463000	Enhancers	Rectal Smooth Muscle	rectum
12	chr3:54460600-54462400	Enhancers	HSMM	muscle
13	chr3:54460600-54463000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:54460600-54463600	Enhancers	NHDF-Ad	bronchial
15	chr3:54460800-54461600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:54461000-54461400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:54461000-54461800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:54461000-54463200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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