Variant report

Variant	rs1999579
Chromosome Location	chr6:64565701-64565702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs11753940	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11754041	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11754728	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755149	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11755371	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11755458	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11755460	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11756799	0.82[ASN][1000 genomes]
rs11756833	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11757713	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11757834	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11758365	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11758738	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1333096	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1333097	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1572115	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16894562	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2008452	0.82[ASN][1000 genomes]
rs2295184	0.87[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs34254442	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3757350	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3778648	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3800491	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3800492	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3800493	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3823446	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs52546	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55678650	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55802833	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56008921	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56088368	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56172936	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56300303	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56302757	0.83[ASN][1000 genomes]
rs56360535	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57217151	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57305989	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57319124	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57657484	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57888259	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57891105	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58198138	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58247688	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58531869	0.84[ASN][1000 genomes]
rs58669837	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59217667	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59674359	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60289981	0.81[ASN][1000 genomes]
rs60564402	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60622008	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60694786	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60949185	0.87[EUR][1000 genomes]
rs61079290	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61094361	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61268055	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61369019	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61606312	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66462731	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66481681	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66520187	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66589841	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66752943	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66804407	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66960758	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66973400	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67044231	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67050101	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67069403	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67149738	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67342772	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67362704	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67632239	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67632720	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67722441	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67725686	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67727731	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67733371	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67767936	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67856629	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67890600	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67904296	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67935772	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67939679	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67958548	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67959580	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs68132675	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs68167248	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68177305	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6911092	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6928683	1.00[JPT][hapmap]
rs6933866	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72884634	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72884640	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72886339	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72886350	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72888273	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890149	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758431	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs958324	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv966621	chr6:64557963-64568466	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64565600-64566000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:64565600-64566400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links