Variant report

Variant	rs1999706
Chromosome Location	chr14:56286070-56286071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56279834..56282515-chr14:56285363..56287657,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10134507	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11620875	0.87[EUR][1000 genomes]
rs11621835	0.84[EUR][1000 genomes]
rs11622627	0.96[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11622641	0.96[EUR][1000 genomes]
rs11622710	0.95[EUR][1000 genomes]
rs11624167	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11624516	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11625571	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11625869	0.85[EUR][1000 genomes]
rs11626057	0.84[EUR][1000 genomes]
rs11627629	0.91[CEU][hapmap];0.88[JPT][hapmap];0.97[EUR][1000 genomes]
rs11628040	0.96[EUR][1000 genomes]
rs12890121	0.85[EUR][1000 genomes]
rs12894971	0.83[EUR][1000 genomes]
rs17253841	0.96[EUR][1000 genomes]
rs17832467	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1999705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2105058	0.86[EUR][1000 genomes]
rs2152287	0.86[EUR][1000 genomes]
rs2184561	0.89[MEX][hapmap];0.95[MKK][hapmap];0.82[EUR][1000 genomes]
rs2342594	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2342595	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34096981	0.86[EUR][1000 genomes]
rs34421003	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34540577	0.85[EUR][1000 genomes]
rs34663121	0.83[EUR][1000 genomes]
rs35290945	0.84[EUR][1000 genomes]
rs35527253	0.84[EUR][1000 genomes]
rs35559254	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36096896	0.85[EUR][1000 genomes]
rs36149160	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36188950	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4601950	0.84[EUR][1000 genomes]
rs55788205	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55837858	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57658601	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61975563	0.85[EUR][1000 genomes]
rs61975579	0.84[EUR][1000 genomes]
rs61977780	0.96[EUR][1000 genomes]
rs61977781	0.96[EUR][1000 genomes]
rs61977782	0.96[EUR][1000 genomes]
rs61977785	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs999817	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56284600-56287400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr14:56285400-56286600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr14:56285400-56287600	Enhancers	Stomach Mucosa	stomach
4	chr14:56285600-56286200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:56285800-56286200	Weak transcription	GM12878-XiMat	blood
6	chr14:56285800-56286400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links