Variant report

Variant	rs199997961
Chromosome Location	chr6:55038947-55038948
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:55038929-55041067	PFSK-1	brain:	n/a	n/a
2	REST	chr6:55038925-55040747	H1-neurons	neurons:	n/a	chr6:55039289-55039302
3	REST	chr6:55038946-55039306	PFSK-1	brain:	n/a	chr6:55039289-55039302
4	SIN3AK20	chr6:55038927-55039275	PFSK-1	brain:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:55038900-55038950	AoSMC	blood vessel:	n/a
2	chr6:55038900-55038950	HUVEC	blood vessel:	n/a
3	chr6:55038900-55038950	NT2-D1	testis:	n/a
4	chr6:55038900-55038950	LNCaP	prostate:	n/a
5	chr6:55038900-55038950	HepG2	liver:	n/a
6	chr6:55038900-55038950	SK-N-SH_RA	brain:	n/a
7	chr6:55038900-55038950	K562	blood:	n/a
8	chr6:55038900-55038950	AG10803	skin:	n/a
9	chr6:55038900-55038950	HRPEpiC	eye:	n/a
10	chr6:55038900-55038950	HEEpiC	esophagus:	n/a
11	chr6:55038900-55038950	SAEC	small airway:	n/a
12	chr6:55038900-55038950	SKMC	muscle:	n/a
13	chr6:55038900-55038950	PFSK-1	brain:	n/a
14	chr6:55038900-55038950	BE2_C	brain:	n/a
15	chr6:55038900-55038950	ovcar-3	ovarian:	n/a
16	chr6:55038900-55038950	NHDF-neo	bronchial:	n/a
17	chr6:55038900-55038950	Hepatocyte	liver:	n/a
18	chr6:55038900-55038950	ProgFib	skin:	n/a
19	chr6:55038900-55038950	HCPEpiC	choroid plexus:	n/a
20	chr6:55038900-55038950	GM12892	blood:	n/a
21	chr6:55038900-55038950	NHBE	bronchial:	n/a
22	chr6:55038900-55038950	GM12891	blood:	n/a
23	chr6:55038900-55038950	MCF10A-Er-Src	breast:	n/a
24	chr6:55038900-55038950	ECC-1	luminal epithelium:	n/a
25	chr6:55038900-55038950	AG04450	lung:	fetal
26	chr6:55038900-55038950	HCM	heart:	n/a
27	chr6:55038900-55038950	GM19239	blood:	n/a
28	chr6:55038900-55038950	AG04449	skin:	fetal
29	chr6:55038900-55038950	MCF-7	breast:	n/a
30	chr6:55038900-55038950	GM06990	blood:	n/a
31	chr6:55038900-55038950	T-47D	breast:	n/a
32	chr6:55038900-55038950	BJ	skin:	n/a
33	chr6:55038900-55038950	HMEC	breast:	n/a
34	chr6:55038900-55038950	HRCEpiC	kidney:	n/a
35	chr6:55038900-55038950	CMK	blood:	n/a
36	chr6:55038900-55038950	IMR90	lung:	fetal
37	chr6:55038900-55038950	NH-A	brain:	n/a
38	chr6:55038900-55038950	HCT-116	colon:	n/a
39	chr6:55038900-55038950	HNPCEpiC	eye:	n/a
40	chr6:55038900-55038950	HRE	kidney:	n/a
41	chr6:55038900-55038950	AG09309	skin:	n/a
42	chr6:55038900-55038950	Jurkat	blood:	n/a
43	chr6:55038900-55038950	HL-60	blood:	n/a
44	chr6:55038900-55038950	HIPEpiC	eye:	n/a
45	chr6:55038900-55038950	Caco-2	colon:	n/a
46	chr6:55038900-55038950	H1-hESC	embryonic stem cell:	embryo
47	chr6:55038900-55038950	SK-N-MC	brain:	n/a
48	chr6:55038900-55038950	NB4	blood:	n/a
49	chr6:55038900-55038950	GM12878	blood:	n/a
50	chr6:55038900-55038950	RPTEC	kidney:	n/a

No data

Variant related genes	Relation type
HCRTR2	TF binding region
HCRTR2	CpG island

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55038800-55039000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:55038800-55039800	Active TSS	Fetal Brain Female	brain

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