Variant report

Variant	rs200213342
Chromosome Location	chrX:76234464-76234465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830377	chrX:75525310-76337197	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv498037	chrX:75586665-76291236	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	esv3347407	chrX:75769946-76251749	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3422093	chrX:76231286-76268284	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3434014	chrX:76231311-76402097	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:76232200-76235000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chrX:76232600-76234800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chrX:76232600-76235000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chrX:76233400-76234600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chrX:76233400-76235400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chrX:76233600-76235000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chrX:76233600-76235200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chrX:76233600-76235400	Active TSS	Brain Angular Gyrus	brain
9	chrX:76233600-76235400	Active TSS	Brain Substantia Nigra	brain
10	chrX:76233600-76235600	Active TSS	Brain Cingulate Gyrus	brain
11	chrX:76233600-76235800	Active TSS	Brain Germinal Matrix	brain
12	chrX:76233600-76235800	Active TSS	Brain Inferior Temporal Lobe	brain
13	chrX:76233800-76235400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chrX:76234000-76234600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
15	chrX:76234000-76235000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chrX:76234000-76235400	Active TSS	Brain Hippocampus Middle	brain
17	chrX:76234000-76235800	Enhancers	H1 Cell Line	embryonic stem cell
18	chrX:76234200-76235000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chrX:76234400-76235200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chrX:76234400-76235400	Active TSS	Cortex derived primary cultured neurospheres	brain
21	chrX:76234400-76235800	Active TSS	Brain Anterior Caudate	brain

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