The 2.0 version of rSNPBase

Variant report

Variant rs2002730
Chromosome Location chr2:11647467-11647468
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:11639600-11647600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
2 chr2:11639600-11648200 Weak transcription Stomach Mucosa stomach
3 chr2:11639600-11655000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr2:11640000-11648000 Weak transcription Fetal Heart heart
5 chr2:11641400-11647800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr2:11641400-11651600 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr2:11641400-11653200 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr2:11641600-11653800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr2:11641800-11647800 Weak transcription Duodenum Mucosa Duodenum
10 chr2:11643400-11651200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr2:11643800-11648200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr2:11644000-11651800 Weak transcription HUES6 Cell Line embryonic stem cell
13 chr2:11644800-11648400 Enhancers Ovary ovary
14 chr2:11645200-11651800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr2:11646200-11648400 Enhancers Skeletal Muscle Male skeletal muscle
16 chr2:11646200-11648600 Enhancers Fetal Muscle Trunk muscle
17 chr2:11646200-11648800 Enhancers Brain Cingulate Gyrus brain
18 chr2:11646200-11648800 Enhancers Fetal Muscle Leg muscle
19 chr2:11646200-11649000 Enhancers Cortex derived primary cultured neurospheres brain
20 chr2:11646200-11649000 Enhancers Brain Inferior Temporal Lobe brain
21 chr2:11646400-11648200 Enhancers Brain Hippocampus Middle brain
22 chr2:11646400-11648800 Enhancers Brain Anterior Caudate brain
23 chr2:11646400-11648800 Enhancers Brain Substantia Nigra brain
24 chr2:11646400-11651600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr2:11646400-11653800 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr2:11646600-11647800 Weak transcription Fetal Adrenal Gland Adrenal Gland
27 chr2:11646600-11647800 Weak transcription Fetal Lung lung
28 chr2:11646600-11648200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr2:11646600-11648800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
30 chr2:11646600-11649000 Enhancers Liver Liver
31 chr2:11646800-11647800 Weak transcription Fetal Intestine Small intestine
32 chr2:11646800-11648000 Weak transcription Fetal Intestine Large intestine
33 chr2:11647000-11647800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr2:11647000-11647800 Weak transcription Gastric stomach
35 chr2:11647000-11647800 Weak transcription Left Ventricle heart
36 chr2:11647000-11647800 Weak transcription Pancreas Pancrea
37 chr2:11647000-11648600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr2:11647000-11664400 Weak transcription Right Ventricle heart
39 chr2:11647000-11665800 Weak transcription Right Atrium heart
40 chr2:11647200-11647600 Weak transcription Brain Angular Gyrus brain
41 chr2:11647400-11648800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
42 chr2:11647400-11648800 Enhancers Fetal Stomach stomach
43 chr2:11647400-11651000 Genic enhancers HepG2 liver

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Last update: Aug 31, 2015