Variant report

Variant	rs2003249
Chromosome Location	chr11:71020138-71020139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11233147	0.81[AMR][1000 genomes]
rs11233174	0.81[AMR][1000 genomes]
rs3893148	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs57938057	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7106184	0.81[AMR][1000 genomes]
rs7112442	0.81[AMR][1000 genomes]
rs73536062	0.81[AMR][1000 genomes]
rs73536063	0.81[AMR][1000 genomes]
rs7358414	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7932973	0.81[AMR][1000 genomes]
rs7938712	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71013400-71034400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:71014000-71020200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:71018400-71022600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:71018600-71022400	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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