Variant report

Variant	rs200385246
Chromosome Location	chr13:51287077-51287078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DLEU7-4	chr13:51285144-51287376	NONHSAT033864

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1037350	chr13:51272518-51447354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv561643	chr13:51286083-51306330	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51269400-51296800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:51282600-51287200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr13:51282600-51287400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:51282600-51287400	Enhancers	Fetal Heart	heart
5	chr13:51282800-51287400	Weak transcription	Primary B cells from cord blood	blood
6	chr13:51282800-51287600	Weak transcription	Thymus	Thymus
7	chr13:51284400-51287400	Enhancers	Fetal Lung	lung
8	chr13:51285000-51289400	Enhancers	Fetal Muscle Leg	muscle
9	chr13:51285000-51290000	Weak transcription	Brain Substantia Nigra	brain
10	chr13:51285200-51288000	Weak transcription	HepG2	liver
11	chr13:51285400-51288200	Enhancers	Fetal Brain Male	brain
12	chr13:51285600-51288200	Enhancers	Fetal Brain Female	brain
13	chr13:51285800-51287200	Enhancers	Ovary	ovary
14	chr13:51285800-51287600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr13:51286200-51287800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr13:51286200-51288600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:51286200-51290600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr13:51286400-51287200	Weak transcription	Fetal Stomach	stomach
19	chr13:51286400-51287200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr13:51286400-51287800	Weak transcription	Brain Hippocampus Middle	brain
21	chr13:51286400-51288000	Enhancers	Adipose Nuclei	Adipose
22	chr13:51286400-51288800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr13:51286400-51288800	Enhancers	HSMM	muscle
24	chr13:51286600-51287200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:51286600-51287200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr13:51286600-51289000	Enhancers	HSMMtube	muscle
27	chr13:51286800-51287400	Enhancers	Fetal Kidney	kidney
28	chr13:51286800-51287400	Flanking Active TSS	NHDF-Ad	bronchial
29	chr13:51286800-51287600	Enhancers	Primary hematopoietic stem cells	blood
30	chr13:51286800-51287800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr13:51286800-51288600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr13:51287000-51287200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
33	chr13:51287000-51287200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr13:51287000-51287200	Genic enhancers	Fetal Thymus	thymus
35	chr13:51287000-51287400	Enhancers	Fetal Intestine Small	intestine
36	chr13:51287000-51287400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr13:51287000-51287600	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr13:51287000-51287800	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr13:51287000-51288200	Enhancers	Psoas Muscle	Psoas
40	chr13:51287000-51288600	Flanking Active TSS	Dnd41	blood

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