Variant report

Variant	rs200550772
Chromosome Location	chr15:58891954-58891955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1551	chr15:58891639-58936580	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58878000-58898400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:58878000-58900000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr15:58878000-58900000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:58878400-58897800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:58878400-58900200	Weak transcription	Brain Substantia Nigra	brain
6	chr15:58878600-58900200	Weak transcription	NHLF	lung
7	chr15:58878800-58904400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:58879200-58893800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:58880200-58904600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:58880600-58920600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:58882600-58904000	Weak transcription	Gastric	stomach
12	chr15:58882600-58907600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:58883000-58901800	Weak transcription	HUVEC	blood vessel
14	chr15:58883200-58900400	Weak transcription	Fetal Heart	heart
15	chr15:58883200-58904600	Strong transcription	HSMM	muscle
16	chr15:58883400-58893800	Weak transcription	Fetal Kidney	kidney
17	chr15:58883400-58900000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr15:58883800-58896600	Weak transcription	HepG2	liver
19	chr15:58884000-58894000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:58884000-58894400	Weak transcription	Aorta	Aorta
21	chr15:58884000-58895400	Strong transcription	Fetal Thymus	thymus
22	chr15:58884200-58893800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:58884200-58894400	Weak transcription	Fetal Stomach	stomach
24	chr15:58884200-58894600	Weak transcription	Esophagus	oesophagus
25	chr15:58884400-58896200	Weak transcription	Lung	lung
26	chr15:58884400-58902600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr15:58884600-58895600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr15:58885200-58897000	Weak transcription	Colon Smooth Muscle	Colon
29	chr15:58885600-58897400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:58885800-58892200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:58885800-58892800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:58885800-58896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:58885800-58906800	Weak transcription	Fetal Brain Male	brain
34	chr15:58886400-58899800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:58886800-58893800	Weak transcription	NHEK	skin
36	chr15:58887200-58906600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:58887400-58892000	Strong transcription	Primary B cells from peripheral blood	blood
38	chr15:58887400-58898200	Weak transcription	Brain Angular Gyrus	brain
39	chr15:58887600-58897600	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr15:58887800-58905200	Weak transcription	Brain Germinal Matrix	brain
41	chr15:58888000-58906200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr15:58888200-58893200	Weak transcription	Stomach Mucosa	stomach
43	chr15:58888400-58900400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr15:58888400-58920000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr15:58888600-58892000	Strong transcription	Primary B cells from cord blood	blood
46	chr15:58888600-58899600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr15:58888800-58892000	Strong transcription	A549	lung
48	chr15:58888800-58893600	Strong transcription	NHDF-Ad	bronchial
49	chr15:58889000-58892000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:58889000-58892000	Strong transcription	Primary hematopoietic stem cells	blood

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