Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10085831	0.86[ASN][1000 genomes]
rs10226913	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10226989	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10267013	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10953453	0.82[EUR][1000 genomes]
rs12055895	0.82[EUR][1000 genomes]
rs12672828	0.82[EUR][1000 genomes]
rs17706774	0.82[EUR][1000 genomes]
rs2192931	0.82[EUR][1000 genomes]
rs2385466	0.89[EUR][1000 genomes]
rs3955473	0.89[EUR][1000 genomes]
rs4571661	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4730052	0.83[EUR][1000 genomes]
rs4730053	0.83[EUR][1000 genomes]
rs59264482	0.88[EUR][1000 genomes]
rs59335487	0.82[EUR][1000 genomes]
rs59814386	0.81[EUR][1000 genomes]
rs62485395	0.80[EUR][1000 genomes]
rs62485396	0.89[EUR][1000 genomes]
rs6466028	0.82[EUR][1000 genomes]
rs6944796	0.87[ASN][1000 genomes]
rs6958846	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73184012	0.86[ASN][1000 genomes]
rs741323	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9885984	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104481600-104514400	Weak transcription	Fetal Kidney	kidney
2	chr7:104503000-104505000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
3	chr7:104503800-104505000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
4	chr7:104504400-104517000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:104504800-104505400	ZNF genes & repeats	Fetal Intestine Large	intestine
6	chr7:104504800-104505400	ZNF genes & repeats	Fetal Intestine Small	intestine

Quick Search: