Variant report

Variant	rs200646602
Chromosome Location	chr8:46843440-46843441
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15439	chr8:46838946-46857964	Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv820693	chr8:46838946-46857964	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv611217	chr8:46839108-46849249	Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	n/a
4	nsv611218	chr8:46839108-46854431	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv611219	chr8:46839108-46855604	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv611220	chr8:46839108-46856654	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv611221	chr8:46839108-46857680	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv611222	chr8:46839108-46886735	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv611223	chr8:46839108-46902917	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv611224	chr8:46840092-46902917	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv6226	chr8:46841679-46845666	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	n/a
12	nsv611225	chr8:46842136-46857680	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv611226	chr8:46842136-46886735	ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv611227	chr8:46843244-46856654	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv611228	chr8:46843244-46857680	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:46841800-46843600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:46841800-46843600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:46841800-46843600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr8:46841800-46843600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:46841800-46843600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr8:46841800-46843600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:46841800-46843600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:46841800-46843600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:46841800-46843600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr8:46841800-46843600	Weak transcription	Brain Angular Gyrus	brain
11	chr8:46841800-46843600	Weak transcription	Brain Germinal Matrix	brain
12	chr8:46841800-46843600	Weak transcription	Fetal Brain Female	brain
13	chr8:46841800-46843600	Weak transcription	Fetal Intestine Small	intestine
14	chr8:46841800-46843600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:46841800-46843600	Weak transcription	Right Ventricle	heart
16	chr8:46841800-46843600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr8:46841800-46843600	Weak transcription	Small Intestine	intestine
18	chr8:46841800-46843800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr8:46841800-46847800	Weak transcription	Lung	lung
20	chr8:46843400-46843600	Bivalent Enhancer	K562	blood
21	chr8:46843400-46843800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr8:46843400-46843800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:46843400-46843800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:46843400-46843800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr8:46843400-46843800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
26	chr8:46843400-46843800	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr8:46843400-46843800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
28	chr8:46843400-46843800	ZNF genes & repeats	Colon Smooth Muscle	Colon
29	chr8:46843400-46843800	ZNF genes & repeats	Fetal Intestine Large	intestine
30	chr8:46843400-46843800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
31	chr8:46843400-46843800	ZNF genes & repeats	Fetal Muscle Leg	muscle
32	chr8:46843400-46843800	ZNF genes & repeats	Fetal Thymus	thymus
33	chr8:46843400-46843800	ZNF genes & repeats	Gastric	stomach
34	chr8:46843400-46843800	ZNF genes & repeats	Stomach Mucosa	stomach
35	chr8:46843400-46843800	ZNF genes & repeats	A549	lung
36	chr8:46843400-46843800	ZNF genes & repeats	GM12878-XiMat	blood
37	chr8:46843400-46843800	ZNF genes & repeats	Hela-S3	cervix
38	chr8:46843400-46843800	ZNF genes & repeats	HepG2	liver
39	chr8:46843400-46843800	ZNF genes & repeats	HMEC	breast
40	chr8:46843400-46843800	ZNF genes & repeats	HSMMtube	muscle
41	chr8:46843400-46843800	ZNF genes & repeats	HUVEC	blood vessel
42	chr8:46843400-46843800	ZNF genes & repeats	NH-A	brain
43	chr8:46843400-46843800	Active TSS	NHDF-Ad	bronchial
44	chr8:46843400-46843800	ZNF genes & repeats	NHEK	skin
45	chr8:46843400-46843800	Active TSS	NHLF	lung
46	chr8:46843400-46843800	ZNF genes & repeats	Osteobl	bone
47	chr8:46843400-46844000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
48	chr8:46843400-46844000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
49	chr8:46843400-46844000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
50	chr8:46843400-46844000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links