Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10075994	0.93[CHD][hapmap]
rs1030462	0.93[CHD][hapmap];0.83[GIH][hapmap];0.84[MEX][hapmap];0.80[TSI][hapmap];0.83[ASN][1000 genomes]
rs11241424	0.84[ASN][1000 genomes]
rs13358449	0.84[ASN][1000 genomes]
rs13358452	0.86[ASN][1000 genomes]
rs1428048	0.89[CHD][hapmap]
rs2016802	0.81[GIH][hapmap]
rs2560593	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2560595	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2560598	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2624459	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624462	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2624464	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2624482	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4455596	0.83[CHB][hapmap];0.86[ASN][1000 genomes]
rs4481381	0.83[ASN][1000 genomes]
rs4587112	0.84[ASN][1000 genomes]
rs7714703	0.86[CHB][hapmap]
rs950073	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs950074	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882755	chr5:116647725-116748877	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv599487	chr5:116732456-116772093	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116741000-116741800	Enhancers	Colon Smooth Muscle	Colon
2	chr5:116741200-116741800	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr5:116741200-116742000	Enhancers	Rectal Mucosa Donor 31	rectum

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