Variant report

Variant	rs2008042
Chromosome Location	chr7:104292072-104292073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10271797	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1465342	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1468864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2385254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4730033	0.89[AFR][1000 genomes]
rs6944590	0.89[AFR][1000 genomes]
rs7784639	0.89[AFR][1000 genomes]
rs7801079	0.87[AFR][1000 genomes]
rs7801340	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024532	chr7:104281393-104299847	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104290000-104292800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:104290400-104295000	Enhancers	Colon Smooth Muscle	Colon
3	chr7:104290400-104295600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:104290800-104293200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:104291000-104295600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr7:104291200-104292400	Enhancers	Brain Anterior Caudate	brain
7	chr7:104291200-104292400	Enhancers	Brain Substantia Nigra	brain
8	chr7:104291400-104292400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr7:104291600-104292200	Enhancers	Fetal Brain Male	brain
10	chr7:104291800-104292600	Enhancers	Brain Cingulate Gyrus	brain
11	chr7:104291800-104293600	Enhancers	Pancreas	Pancrea
12	chr7:104292000-104292600	Enhancers	Brain Hippocampus Middle	brain
13	chr7:104292000-104295000	Weak transcription	Brain Germinal Matrix	brain
14	chr7:104292000-104296000	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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