Variant report

Variant	rs200942212
Chromosome Location	chr9:32416-32417
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr9:32412-32662	GM12878	blood:	n/a	n/a
2	SIX5	chr9:31488-33233	K562	blood:	n/a	n/a
3	USF1	chr9:32325-33162	A549	lung:	n/a	n/a
4	TRIM28	chr9:32253-32709	K562	blood:	n/a	n/a
5	FOSL2	chr9:31402-33201	HepG2	liver:	n/a	n/a
6	MAX	chr9:32380-32638	K562	blood:	n/a	n/a
7	JUND	chr9:31801-33214	HepG2	liver:	n/a	n/a
8	FOXA1	chr9:32199-33266	HepG2	liver:	n/a	n/a
9	PBX3	chr9:32390-32551	GM12878	blood:	n/a	n/a
10	SPI1	chr9:31938-33179	K562	blood:	n/a	n/a
11	GABPA	chr9:32343-32862	Hela-S3	cervix:	n/a	n/a
12	MYC	chr9:32388-32588	K562	blood:	n/a	n/a
13	CBX3	chr9:31837-33133	K562	blood:	n/a	n/a
14	ZBTB33	chr9:31650-33166	HepG2	liver:	n/a	n/a
15	SIX5	chr9:31752-32828	K562	blood:	n/a	n/a
16	MAX	chr9:32406-32749	K562	blood:	n/a	n/a
17	RCOR1	chr9:32392-32607	K562	blood:	n/a	n/a
18	HEY1	chr9:27615-33266	K562	blood:	n/a	n/a
19	USF1	chr9:32379-33172	HepG2	liver:	n/a	n/a
20	STAT5A	chr9:32010-33054	K562	blood:	n/a	chr9:32126-32134 chr9:32062-32069
21	REST	chr9:32321-32550	K562	blood:	n/a	n/a
22	POU2F2	chr9:31414-33234	GM12878	blood:	n/a	n/a
23	TCF12	chr9:32005-32469	HepG2	liver:	n/a	n/a
24	NR2F2	chr9:32019-33110	K562	blood:	n/a	n/a
25	CEBPD	chr9:32078-32803	K562	blood:	n/a	n/a
26	ZBTB33	chr9:30192-33239	K562	blood:	n/a	n/a
27	NR2F2	chr9:28019-33348	K562	blood:	n/a	n/a
28	IRF4	chr9:32375-32957	GM12878	blood:	n/a	n/a
29	POLR2A	chr9:32362-32605	Hela-S3	cervix:	n/a	n/a
30	MYC	chr9:32387-32749	K562	blood:	n/a	n/a
31	GATA2	chr9:28991-33461	K562	blood:	n/a	chr9:32375-32382 chr9:32375-32385 chr9:32375-32382 chr9:32373-32382 chr9:32375-32382 chr9:32373-32383
32	SP1	chr9:31921-33274	HepG2	liver:	n/a	n/a
33	TAL1	chr9:32225-32612	K562	blood:	n/a	n/a
34	SPI1	chr9:31758-33210	K562	blood:	n/a	n/a
35	CBX3	chr9:32087-32874	K562	blood:	n/a	n/a
36	USF1	chr9:32268-33124	HepG2	liver:	n/a	n/a
37	ZBTB33	chr9:32250-33016	GM12878	blood:	n/a	n/a
38	ZBTB33	chr9:30687-33160	K562	blood:	n/a	n/a
39	RXRA	chr9:32166-33128	HepG2	liver:	n/a	n/a
40	FOSL2	chr9:30688-33270	HepG2	liver:	n/a	n/a
41	TRIM28	chr9:31958-32979	K562	blood:	n/a	n/a
42	SP1	chr9:32078-33170	K562	blood:	n/a	n/a
43	HEY1	chr9:27615-33242	K562	blood:	n/a	n/a
44	RXRA	chr9:31578-33054	HepG2	liver:	n/a	n/a
45	CEBPB	chr9:31850-33257	K562	blood:	n/a	n/a
46	HEY1	chr9:31786-32934	HepG2	liver:	n/a	n/a
47	CTCF	chr9:32361-32590	K562	blood:	n/a	n/a
48	EP300	chr9:32370-32589	K562	blood:	n/a	n/a
49	STAT5A	chr9:32048-33097	K562	blood:	n/a	chr9:32126-32134 chr9:32062-32069
50	POLR2A	chr9:31535-33200	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000181404	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8400	chr9:10001-51412	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv891939	chr9:10001-129899	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	esv19929	chr9:10485-48531	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv949672	chr9:13091-274606	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv948701	chr9:13091-499586	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
6	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	esv3347609	chr9:28452-36550	Active TSS Weak transcription Enhancers	TF binding region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	esv3366630	chr9:28452-36550	Active TSS Enhancers Weak transcription	TF binding region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	esv3353764	chr9:28452-37550	Active TSS Weak transcription Enhancers	TF binding region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
10	nsv482863	chr9:31933-129899	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv427835	chr9:31994-235675	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	esv2758174	chr9:31994-383816	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	esv2759654	chr9:31994-383816	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	nsv968757	chr9:32355-47190	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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