Variant report

Variant	rs2009457
Chromosome Location	chr16:80151800-80151801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1121666	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1382385	0.87[AMR][1000 genomes]
rs2016206	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4889108	0.87[AMR][1000 genomes]
rs9940069	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80138000-80156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:80148400-80156000	Weak transcription	Ovary	ovary
3	chr16:80148600-80155600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:80151000-80151800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr16:80151200-80152200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr16:80151400-80151800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr16:80151400-80151800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:80151400-80151800	Enhancers	Adipose Nuclei	Adipose
9	chr16:80151400-80152000	Enhancers	Fetal Lung	lung
10	chr16:80151400-80152200	Enhancers	NHEK	skin
11	chr16:80151800-80153800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr16:80151800-80154600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr16:80151800-80154600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr16:80151800-80159600	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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