Variant report

Variant	rs201141877
Chromosome Location	chr13:51173604-51173605
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2158567	chr13:51173414-51173820	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3442825	chr13:51173483-51173724	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3490745	chr13:51173486-51173693	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3490746	chr13:51173486-51173693	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv64432	chr13:51173602-51173644	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51160200-51174000	Enhancers	Primary B cells from peripheral blood	blood
2	chr13:51168000-51174000	Enhancers	Fetal Muscle Leg	muscle
3	chr13:51168000-51174400	Enhancers	Fetal Thymus	thymus
4	chr13:51168400-51174000	Enhancers	Left Ventricle	heart
5	chr13:51168800-51173800	Enhancers	Adipose Nuclei	Adipose
6	chr13:51169000-51174400	Enhancers	Fetal Heart	heart
7	chr13:51169200-51174000	Enhancers	Primary B cells from cord blood	blood
8	chr13:51169200-51174000	Enhancers	Thymus	Thymus
9	chr13:51169200-51174200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr13:51169200-51174800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:51169800-51174600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr13:51169800-51175000	Enhancers	Dnd41	blood
13	chr13:51171600-51174800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr13:51172600-51173800	Enhancers	Fetal Stomach	stomach
15	chr13:51172600-51174600	Enhancers	K562	blood
16	chr13:51173000-51174800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:51173400-51177000	Weak transcription	Right Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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