Variant report

Variant	rs201240643
Chromosome Location	chr19:36807553-36807554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:36806613-36807987	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
LINC00665	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520020	chr19:36721368-36822594	Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv9715	chr19:36729688-36811749	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1063208	chr19:36743461-36847486	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv960831	chr19:36744378-36813769	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1056901	chr19:36749658-36847486	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1061054	chr19:36751703-36847486	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1055260	chr19:36752221-36847486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1056850	chr19:36752663-36847486	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1064983	chr19:36752663-36847625	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1057579	chr19:36752663-36847822	Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv1825146	chr19:36800927-36846993	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
12	esv1837043	chr19:36800927-36846993	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv2474	chr19:36804469-36865415	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	esv2763143	chr19:36805705-36847498	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1059568	chr19:36806475-36847864	Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv1823621	chr19:36807288-36845863	Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv1064343	chr19:36807288-36853102	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36799400-36816400	Weak transcription	Primary T cells from cord blood	blood
2	chr19:36799800-36809600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:36800400-36810000	Weak transcription	Placenta	Placenta
4	chr19:36800600-36810400	Weak transcription	Esophagus	oesophagus
5	chr19:36800600-36811200	Weak transcription	Pancreas	Pancrea
6	chr19:36800600-36816400	Weak transcription	Ovary	ovary
7	chr19:36800600-36816600	Weak transcription	Spleen	Spleen
8	chr19:36800800-36808200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr19:36800800-36810000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr19:36800800-36816400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr19:36800800-36822000	Weak transcription	Psoas Muscle	Psoas
12	chr19:36801000-36810200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr19:36801000-36816400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr19:36801200-36810200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr19:36801200-36810400	Weak transcription	Brain Germinal Matrix	brain
16	chr19:36801200-36814400	Weak transcription	Primary B cells from cord blood	blood
17	chr19:36801200-36816000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr19:36801200-36816200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr19:36801200-36816400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr19:36801200-36816400	Weak transcription	Adipose Nuclei	Adipose
21	chr19:36801200-36816600	Weak transcription	Right Ventricle	heart
22	chr19:36801200-36817000	Weak transcription	Brain Anterior Caudate	brain
23	chr19:36801200-36817000	Weak transcription	Fetal Kidney	kidney
24	chr19:36801200-36817600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr19:36801600-36809800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr19:36802200-36815800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr19:36802800-36816400	Weak transcription	Brain Hippocampus Middle	brain
28	chr19:36803200-36808000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr19:36804000-36811600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr19:36804000-36820600	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr19:36804200-36811200	Weak transcription	Fetal Lung	lung
32	chr19:36804600-36808600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr19:36804800-36820800	Weak transcription	Brain Angular Gyrus	brain
34	chr19:36805000-36808200	Weak transcription	Fetal Intestine Small	intestine
35	chr19:36805000-36811000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr19:36805000-36816600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr19:36805200-36816400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr19:36805400-36808000	Weak transcription	NHDF-Ad	bronchial
39	chr19:36805400-36822000	Weak transcription	HSMMtube	muscle
40	chr19:36805600-36815800	Weak transcription	NHEK	skin
41	chr19:36805800-36815200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr19:36805800-36815800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr19:36805800-36815800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr19:36805800-36816400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr19:36805800-36821000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr19:36806000-36809200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr19:36806200-36807600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr19:36806400-36809200	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr19:36806400-36811600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr19:36806400-36820600	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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