Variant report

Variant	rs2012661
Chromosome Location	chrX:74592821-74592822
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11796028	0.87[CHB][hapmap]
rs11796750	0.87[CHB][hapmap]
rs12832571	0.87[CHB][hapmap]
rs12839727	0.87[CHB][hapmap]
rs1936915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1936917	0.87[CHB][hapmap]
rs2124691	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2124693	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2367174	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2886929	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4892408	0.87[CHB][hapmap]
rs4892580	0.87[CHB][hapmap]
rs5937369	0.87[CHB][hapmap]
rs5937384	0.87[CHB][hapmap]
rs5938060	0.87[CHB][hapmap]
rs5938075	0.87[CHB][hapmap]
rs5981861	0.87[CHB][hapmap]
rs5981875	0.87[CHB][hapmap]
rs5981886	0.87[CHB][hapmap]
rs6607563	0.87[CHB][hapmap]
rs6647139	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs6647730	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6647731	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs6647753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7052314	0.87[CHB][hapmap]
rs7878508	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs9887743	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13841	chrX:74461978-74657064	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532360	chrX:74462926-74651249	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv916109	chrX:74463757-74651249	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2756527	chrX:74523871-74602347	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv949041	chrX:74523871-74645058	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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