Variant report

Variant	rs201294968
Chromosome Location	chr4:69205344-69205345
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:69205285-69205616	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:69200762..69202347-chr4:69204552..69206284,2	MCF-7	breast:
2	chr4:69201801..69210708-chr4:69210917..69216982,18	MCF-7	breast:

Variant related genes	Relation type
YTHDC1	TF binding region
ENSG00000083896	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008084	chr4:68797598-69482831	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv537131	chr4:68797598-69482831	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1806586	chr4:68943858-69592846	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv461546	chr4:69049643-69223057	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv594506	chr4:69049643-69223057	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv537132	chr4:69149648-69482831	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	esv2757061	chr4:69178920-69631668	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv437385	chr4:69204755-69383357	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69182600-69213200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:69182800-69207200	Weak transcription	Small Intestine	intestine
3	chr4:69182800-69209200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:69183000-69207800	Weak transcription	Esophagus	oesophagus
5	chr4:69184200-69207800	Weak transcription	Spleen	Spleen
6	chr4:69184200-69212200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:69184200-69212800	Weak transcription	Aorta	Aorta
8	chr4:69189200-69214400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:69194800-69207800	Weak transcription	Hela-S3	cervix
10	chr4:69195800-69207800	Weak transcription	Psoas Muscle	Psoas
11	chr4:69198600-69212800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:69199000-69213800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:69200400-69206600	Weak transcription	Primary B cells from cord blood	blood
14	chr4:69202400-69213000	Weak transcription	Fetal Stomach	stomach
15	chr4:69203000-69213400	Weak transcription	Colonic Mucosa	Colon
16	chr4:69203200-69207400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:69203200-69207600	Weak transcription	K562	blood
18	chr4:69203200-69207800	Weak transcription	Ovary	ovary
19	chr4:69203200-69208000	Weak transcription	NHLF	lung
20	chr4:69203200-69211600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:69203400-69205800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:69203400-69205800	Weak transcription	HUVEC	blood vessel
23	chr4:69203400-69206000	Enhancers	Brain Angular Gyrus	brain
24	chr4:69203400-69207200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr4:69203400-69207600	Weak transcription	Fetal Brain Male	brain
26	chr4:69203400-69210400	Weak transcription	Lung	lung
27	chr4:69203400-69212000	Weak transcription	HSMMtube	muscle
28	chr4:69203400-69212200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr4:69203400-69213000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr4:69203600-69205400	Weak transcription	Fetal Intestine Large	intestine
31	chr4:69203600-69206000	Weak transcription	A549	lung
32	chr4:69203600-69206800	Weak transcription	HSMM	muscle
33	chr4:69203600-69207000	Weak transcription	GM12878-XiMat	blood
34	chr4:69203600-69207200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:69203600-69207200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr4:69203600-69207200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr4:69203600-69207200	Weak transcription	HepG2	liver
38	chr4:69203600-69207600	Weak transcription	NH-A	brain
39	chr4:69203600-69207800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr4:69203600-69207800	Weak transcription	Fetal Brain Female	brain
41	chr4:69203600-69207800	Weak transcription	Thymus	Thymus
42	chr4:69203600-69207800	Weak transcription	NHDF-Ad	bronchial
43	chr4:69203600-69210200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr4:69203600-69211800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr4:69203600-69212000	Weak transcription	Placenta	Placenta
46	chr4:69203600-69212400	Weak transcription	Fetal Kidney	kidney
47	chr4:69203600-69212600	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr4:69203600-69213400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr4:69203600-69214000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr4:69203800-69205800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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