Variant report

Variant	rs201436
Chromosome Location	chr7:101733576-101733577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101704873..101706493-chr7:101731658..101734496,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10953358	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1637257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16869536	1.00[JPT][hapmap]
rs169307	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1734879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201435	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs201438	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201440	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201441	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201442	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201443	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201445	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201446	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201447	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201448	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201449	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201450	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201451	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201452	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201453	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201454	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201455	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201456	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201457	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201458	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201459	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201461	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201464	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201466	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201468	1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201469	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201470	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201471	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201472	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs201475	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201477	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201478	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201480	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201481	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs201482	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201485	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201486	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201489	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs201490	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201492	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201493	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201497	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201498	0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs201500	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201502	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201503	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201504	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs201505	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201507	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs201508	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs201509	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs201511	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs201522	0.85[EUR][1000 genomes]
rs201526	0.85[EUR][1000 genomes]
rs201527	0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs201529	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2529095	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2529373	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2734782	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34247954	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs380175	0.82[EUR][1000 genomes]
rs382228	0.84[EUR][1000 genomes]
rs382270	1.00[JPT][hapmap]
rs382934	1.00[JPT][hapmap]
rs386207	1.00[JPT][hapmap]
rs395848	1.00[JPT][hapmap]
rs436287	0.82[EUR][1000 genomes]
rs6950791	0.83[EUR][1000 genomes]
rs6970800	0.83[EUR][1000 genomes]
rs6976246	1.00[JPT][hapmap]
rs7788329	1.00[JPT][hapmap]
rs7800374	1.00[JPT][hapmap]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101707200-101738000	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
3	chr7:101715200-101749800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:101715400-101749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr7:101715600-101745200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr7:101715600-101745200	Weak transcription	HSMMtube	muscle
7	chr7:101715800-101741000	Weak transcription	Gastric	stomach
8	chr7:101715800-101741200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:101716000-101736600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:101716000-101743000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr7:101716000-101746600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr7:101717800-101741200	Weak transcription	Pancreas	Pancrea
14	chr7:101718600-101736600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr7:101723800-101735600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:101723800-101736800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:101723800-101740200	Weak transcription	HepG2	liver
18	chr7:101724000-101735400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:101724000-101741600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:101724400-101740000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr7:101725400-101738800	Weak transcription	Fetal Thymus	thymus
22	chr7:101725400-101740400	Weak transcription	Left Ventricle	heart
23	chr7:101725600-101736600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:101725600-101740800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:101725600-101741000	Weak transcription	Right Ventricle	heart
26	chr7:101725600-101741200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:101726000-101735600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:101726000-101736600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:101726200-101736800	Weak transcription	Fetal Heart	heart
30	chr7:101726200-101741000	Weak transcription	Liver	Liver
31	chr7:101726200-101747800	Weak transcription	Osteobl	bone
32	chr7:101727000-101735600	Weak transcription	Placenta	Placenta
33	chr7:101727000-101736800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr7:101728600-101736600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr7:101728800-101736800	Weak transcription	Fetal Intestine Large	intestine
36	chr7:101729000-101735400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr7:101729000-101740400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:101729000-101743600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr7:101729800-101736800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:101730400-101733600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:101732600-101733600	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr7:101732800-101733600	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr7:101733000-101740600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr7:101733000-101741000	Weak transcription	K562	blood
45	chr7:101733000-101744200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr7:101733200-101734800	Weak transcription	Fetal Intestine Small	intestine
47	chr7:101733200-101735200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr7:101733200-101735400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr7:101733200-101735400	Weak transcription	Fetal Stomach	stomach
50	chr7:101733200-101735600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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